Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

Incomplete lineage sorting and phenotypic evolution in marsupials

S Feng, M Bai, I Rivas-González, C Li, S Liu, Y Tong… - Cell, 2022 - cell.com
Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during
rapid speciation events, inducing incongruences between gene trees and species trees. ILS …

Ensembl comparative genomics resources

J Herrero, M Muffato, K Beal, S Fitzgerald, L Gordon… - Database, 2016 - academic.oup.com
Evolution provides the unifying framework with which to understand biology. The coherent
investigation of genic and genomic data often requires comparative genomics analyses …

Adaptation and conservation insights from the koala genome

RN Johnson, D O'Meally, Z Chen, GJ Etherington… - Nature …, 2018 - nature.com
The koala, the only extant species of the marsupial family Phascolarctidae, is classified as
'vulnerable'due to habitat loss and widespread disease. We sequenced the koala genome …

Ensembl 2012

P Flicek, MR Amode, D Barrell, K Beal… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Ensembl project (http://www. ensembl. org) provides genome resources for
chordate genomes with a particular focus on human genome data as well as data for key …

The Genome 10K Project: a way forward

KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …

Threatened Species Initiative: Empowering conservation action using genomic resources

CJ Hogg, K Ottewell, P Latch, M Rossetto… - Proceedings of the …, 2022 - pnas.org
Globally, 15,521 animal species are listed as threatened by the International Union for the
Conservation of Nature, and of these less than 3% have genomic resources that can inform …

Centromere repeats: hidden gems of the genome

G Hartley, RJ O'Neill - Genes, 2019 - mdpi.com
Satellite DNAs are now regarded as powerful and active contributors to genomic and
chromosomal evolution. Paired with mobile transposable elements, these repetitive …