After the pandemic: perspectives on the future trajectory of COVID-19

A Telenti, A Arvin, L Corey, D Corti, MS Diamond… - Nature, 2021 - nature.com
There is a realistic expectation that the global effort in vaccination will bring the pandemic
caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) under control …

The ecology of viral emergence

EC Holmes - Annual Review of Virology, 2022 - annualreviews.org
The coronavirus disease 2019 (COVID-19) pandemic has had a profound impact on human
health, economic well-being, and societal function. It is essential that we use this …

Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation

NS Upham, JA Esselstyn, W Jetz - PLoS biology, 2019 - journals.plos.org
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …

Ongoing global and regional adaptive evolution of SARS-CoV-2

ND Rochman, YI Wolf, G Faure… - Proceedings of the …, 2021 - National Acad Sciences
Understanding the trends in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) evolution is paramount to control the COVID-19 pandemic. We analyzed more than …

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

OA MacLean, S Lytras, S Weaver, JB Singer… - PLoS …, 2021 - journals.plos.org
Virus host shifts are generally associated with novel adaptations to exploit the cells of the
new host species optimally. Surprisingly, Severe Acute Respiratory Syndrome Coronavirus …

[HTML][HTML] On the evolutionary epidemiology of SARS-CoV-2

T Day, S Gandon, S Lion, SP Otto - Current Biology, 2020 - cell.com
There is no doubt that the novel coronavirus SARS-CoV-2 that causes COVID-19 is mutating
and thus has the potential to adapt during the current pandemic. Whether this evolution will …

Global disparities in SARS-CoV-2 genomic surveillance

AF Brito, E Semenova, G Dudas, GW Hassler… - Nature …, 2022 - nature.com
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize
molecular tests, treatments, vaccines, and guide public health responses. To investigate the …

Unlocking capacities of genomics for the COVID-19 response and future pandemics

S Knyazev, K Chhugani, V Sarwal, R Ayyala, H Singh… - Nature …, 2022 - nature.com
During the COVID-19 pandemic, genomics and bioinformatics have emerged as essential
public health tools. The genomic data acquired using these methods have supported the …

A highly virulent variant of HIV-1 circulating in the Netherlands

C Wymant, D Bezemer, F Blanquart, L Ferretti, A Gall… - Science, 2022 - science.org
We discovered a highly virulent variant of subtype-B HIV-1 in the Netherlands. One hundred
nine individuals with this variant had a 0.54 to 0.74 log10 increase (ie, a~ 3.5-fold to 5.5-fold …

[HTML][HTML] Distinct viral clades of SARS‐CoV‐2: implications for modeling of viral spread

A Brufsky - Journal of medical virology, 2020 - ncbi.nlm.nih.gov
A current model of the coronavirus disease 2019 (COVID‐19) epidemic 1 appears to have
differing degrees of projected total deaths in various areas of the United States despite the …