Abstract Machine learning has become a pivotal tool for many projects in computational
biology, bioinformatics, and health informatics. Nevertheless, beginners and biomedical …

Biological entities are involved in intricate and complex interactions, in which uncovering the
biological information from the network concepts are of great significance. Benefiting from …

Abstract WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but
useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results …

Abstract The Gene Ontology (GO; http://www. geneontology. org) is a community-based
bioinformatics resource that supplies information about gene product function using …

Summary The Arabidopsis Information Resource (TAIR) is a continuously updated, online
database of genetic and molecular biology data for the model plant Arabidopsis thaliana that …

The Rfam database (available at http://rfam. xfam. org) is a collection of non-coding RNA
families represented by manually curated sequence alignments, consensus secondary …

IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …

Abstract The Biological General Repository for Interaction Datasets (BioGRID:
http://thebiogrid. org) is an open access database that houses genetic and protein …

MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …

Abstract Since 2005, the Pathogen–Host Interactions Database (PHI-base) has manually
curated experimentally verified pathogenicity, virulence and effector genes from fungal …