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[HTML][HTML] On structural and practical identifiability
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …
equations which are often applied in systems biology. The development of mathematical …
[HTML][HTML] A review and perspective on hybrid modeling methodologies
The term hybrid modeling refers to the combination of parametric models (typically derived
from knowledge about the system) and nonparametric models (typically deduced from data) …
from knowledge about the system) and nonparametric models (typically deduced from data) …
Structural identifiability of dynamic systems biology models
AF Villaverde, A Barreiro… - PLoS computational …, 2016 - journals.plos.org
A powerful way of gaining insight into biological systems is by creating a nonlinear
differential equation model, which usually contains many unknown parameters. Such a …
differential equation model, which usually contains many unknown parameters. Such a …
[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …
cell factories that convert sugars into chemicals. These processes range from the production …
Introductory overview of identifiability analysis: A guide to evaluating whether you have the right type of data for your modeling purpose
Identifiability is a fundamental concept in parameter estimation, and therefore key to the
large majority of environmental modeling applications. Parameter identifiability analysis …
large majority of environmental modeling applications. Parameter identifiability analysis …
Structural identifiability and observability of compartmental models of the COVID-19 pandemic
The recent coronavirus disease (COVID-19) outbreak has dramatically increased the public
awareness and appreciation of the utility of dynamic models. At the same time, the …
awareness and appreciation of the utility of dynamic models. At the same time, the …
Distributed sensing along fibers for smart clothing
Textile sensors transform our everyday clothing into a means to track movement and
biosignals in a completely unobtrusive way. One major hindrance to the adoption of “smart” …
biosignals in a completely unobtrusive way. One major hindrance to the adoption of “smart” …
Comparison of approaches for parameter identifiability analysis of biological systems
Motivation: Modeling of dynamical systems using ordinary differential equations is a popular
approach in the field of Systems Biology. The amount of experimental data that are used to …
approach in the field of Systems Biology. The amount of experimental data that are used to …
Observability and structural identifiability of nonlinear biological systems
AF Villaverde - Complexity, 2019 - Wiley Online Library
Observability is a modelling property that describes the possibility of inferring the internal
state of a system from observations of its output. A related property, structural identifiability …
state of a system from observations of its output. A related property, structural identifiability …
A protocol for dynamic model calibration
Ordinary differential equation models are nowadays widely used for the mechanistic
description of biological processes and their temporal evolution. These models typically …
description of biological processes and their temporal evolution. These models typically …