[HTML][HTML] On structural and practical identifiability

FG Wieland, AL Hauber, M Rosenblatt… - Current Opinion in …, 2021 - Elsevier
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …

[HTML][HTML] A review and perspective on hybrid modeling methodologies

AM Schweidtmann, D Zhang, M von Stosch - Digital Chemical Engineering, 2024 - Elsevier
The term hybrid modeling refers to the combination of parametric models (typically derived
from knowledge about the system) and nonparametric models (typically deduced from data) …

Structural identifiability of dynamic systems biology models

AF Villaverde, A Barreiro… - PLoS computational …, 2016 - journals.plos.org
A powerful way of gaining insight into biological systems is by creating a nonlinear
differential equation model, which usually contains many unknown parameters. Such a …

[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance

J Almquist, M Cvijovic, V Hatzimanikatis, J Nielsen… - Metabolic …, 2014 - Elsevier
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …

Introductory overview of identifiability analysis: A guide to evaluating whether you have the right type of data for your modeling purpose

JHA Guillaume, JD Jakeman, S Marsili-Libelli… - … Modelling & Software, 2019 - Elsevier
Identifiability is a fundamental concept in parameter estimation, and therefore key to the
large majority of environmental modeling applications. Parameter identifiability analysis …

Structural identifiability and observability of compartmental models of the COVID-19 pandemic

G Massonis, JR Banga, AF Villaverde - Annual reviews in control, 2021 - Elsevier
The recent coronavirus disease (COVID-19) outbreak has dramatically increased the public
awareness and appreciation of the utility of dynamic models. At the same time, the …

Distributed sensing along fibers for smart clothing

BC Hannigan, TJ Cuthbert, C Ahmadizadeh… - Science …, 2024 - science.org
Textile sensors transform our everyday clothing into a means to track movement and
biosignals in a completely unobtrusive way. One major hindrance to the adoption of “smart” …

Comparison of approaches for parameter identifiability analysis of biological systems

A Raue, J Karlsson, MP Saccomani, M Jirstrand… - …, 2014 - academic.oup.com
Motivation: Modeling of dynamical systems using ordinary differential equations is a popular
approach in the field of Systems Biology. The amount of experimental data that are used to …

Observability and structural identifiability of nonlinear biological systems

AF Villaverde - Complexity, 2019 - Wiley Online Library
Observability is a modelling property that describes the possibility of inferring the internal
state of a system from observations of its output. A related property, structural identifiability …

A protocol for dynamic model calibration

AF Villaverde, D Pathirana, F Fröhlich… - Briefings in …, 2022 - academic.oup.com
Ordinary differential equation models are nowadays widely used for the mechanistic
description of biological processes and their temporal evolution. These models typically …