Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
By controlling nutrient cycling and biomass production at the base of the food web,
interactions between phytoplankton and bacteria represent a fundamental ecological …
interactions between phytoplankton and bacteria represent a fundamental ecological …
Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
In the ongoing debates about eukaryogenesis—the series of evolutionary events leading to
the emergence of the eukaryotic cell from prokaryotic ancestors—members of the Asgard …
the emergence of the eukaryotic cell from prokaryotic ancestors—members of the Asgard …
A social niche breadth score reveals niche range strategies of generalists and specialists
Generalists can survive in many environments, whereas specialists are restricted to a single
environment. Although a classical concept in ecology, niche breadth has remained …
environment. Although a classical concept in ecology, niche breadth has remained …
Ecology and evolution of metabolic cross-feeding interactions in bacteria
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Large-scale recovery of genomes from isolates, single cells, and metagenomic data has
been made possible by advances in computational methods and substantial reductions in …
been made possible by advances in computational methods and substantial reductions in …
Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation
Cyanobacteria are photosynthetic prokaryotes that inhabit diverse aquatic and terrestrial
environments. However, the evolutionary mechanisms involved in the cyanobacterial habitat …
environments. However, the evolutionary mechanisms involved in the cyanobacterial habitat …
Mixotrophy in the marine plankton
Mixotrophs are important components of the bacterioplankton, phytoplankton,
microzooplankton, and (sometimes) zooplankton in coastal and oceanic waters. Bacterivory …
microzooplankton, and (sometimes) zooplankton in coastal and oceanic waters. Bacterivory …
Implications of streamlining theory for microbial ecology
Whether a small cell, a small genome or a minimal set of chemical reactions with self-
replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said,'simplicity …
replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said,'simplicity …
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …