Absence of a simple code: how transcription factors read the genome
Transcription factors (TFs) influence cell fate by interpreting the regulatory DNA within a
genome. TFs recognize DNA in a specific manner; the mechanisms underlying this …
genome. TFs recognize DNA in a specific manner; the mechanisms underlying this …
The plant heat stress transcription factor (Hsf) family: structure, function and evolution
Ten years after the first overview of a complete plant Hsf family was presented for
Arabidopsis thaliana by Nover et al.[1], we compiled data for 252 Hsfs from nine plant …
Arabidopsis thaliana by Nover et al.[1], we compiled data for 252 Hsfs from nine plant …
Mammalian heat shock response and mechanisms underlying its genome-wide transcriptional regulation
The heat shock response (HSR) is critical for survival of all organisms. However, its scope,
extent, and the molecular mechanism of regulation are poorly understood. Here we show …
extent, and the molecular mechanism of regulation are poorly understood. Here we show …
Controlling gene expression in response to stress
Acute stress puts cells at risk, and rapid adaptation is crucial for maximizing cell survival.
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …
Molecular mechanisms driving transcriptional stress responses
Proteotoxic stress, that is, stress caused by protein misfolding and aggregation, triggers the
rapid and global reprogramming of transcription at genes and enhancers. Genome-wide …
rapid and global reprogramming of transcription at genes and enhancers. Genome-wide …
The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells
Pioneer transcription factors recognise and bind their target sequences in inaccessible
chromatin to establish new transcriptional networks throughout development and cellular …
chromatin to establish new transcriptional networks throughout development and cellular …
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq) has
become the dominant technique for map** transcription factor (TF) binding regions …
become the dominant technique for map** transcription factor (TF) binding regions …
[HTML][HTML] Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
Members of transcription factor families typically have similar DNA binding specificities yet
execute unique functions in vivo. Transcription factors often bind DNA as multiprotein …
execute unique functions in vivo. Transcription factors often bind DNA as multiprotein …
HSF1 at a glance
ABSTRACT Heat shock factor 1 (HSF1) is an evolutionarily highly conserved transcription
factor that coordinates stress-induced transcription and directs versatile physiological …
factor that coordinates stress-induced transcription and directs versatile physiological …
Distinct properties of cell-type-specific and shared transcription factor binding sites
Most human transcription factors bind a small subset of potential genomic sites and often
use different subsets in different cell types. To identify mechanisms that govern cell-type …
use different subsets in different cell types. To identify mechanisms that govern cell-type …