[HTML][HTML] Computational methods in drug discovery
SP Leelananda, S Lindert - Beilstein journal of organic …, 2016 - beilstein-journals.org
The process for drug discovery and development is challenging, time consuming and
expensive. Computer-aided drug discovery (CADD) tools can act as a virtual shortcut …
expensive. Computer-aided drug discovery (CADD) tools can act as a virtual shortcut …
Emerging computational methods for the rational discovery of allosteric drugs
Allosteric drug development holds promise for delivering medicines that are more selective
and less toxic than those that target orthosteric sites. To date, the discovery of allosteric …
and less toxic than those that target orthosteric sites. To date, the discovery of allosteric …
High-resolution microtubule structures reveal the structural transitions in αβ-tubulin upon GTP hydrolysis
Dynamic instability, the stochastic switching between growth and shrinkage, is essential for
microtubule function. This behavior is driven by GTP hydrolysis in the microtubule lattice and …
microtubule function. This behavior is driven by GTP hydrolysis in the microtubule lattice and …
CageCavityCalc (C3): A Computational Tool for Calculating and Visualizing Cavities in Molecular Cages
Organic (porous) and metal–organic cages are promising biomimetic platforms with diverse
applications spanning recognition, sensing, and catalysis. The key to the emergence of …
applications spanning recognition, sensing, and catalysis. The key to the emergence of …
POVME 3.0: software for map** binding pocket flexibility
JR Wagner, J Sørensen, N Hensley… - Journal of chemical …, 2017 - ACS Publications
We present a substantial update to the open-source POVME binding pocket analysis
software. New capabilities of POVME 3.0 include a flexible chemical coloring scheme for …
software. New capabilities of POVME 3.0 include a flexible chemical coloring scheme for …
How μ-opioid receptor recognizes fentanyl
Roughly half of the drug overdose-related deaths in the United States are related to
synthetic opioids represented by fentanyl which is a potent agonist of mu-opioid receptor …
synthetic opioids represented by fentanyl which is a potent agonist of mu-opioid receptor …
Activation of G-protein-coupled receptors correlates with the formation of a continuous internal water pathway
Recent crystal structures of G-protein-coupled receptors (GPCRs) have revealed ordered
internal water molecules, raising questions about the functional role of those waters for …
internal water molecules, raising questions about the functional role of those waters for …
POVME 2.0: an enhanced tool for determining pocket shape and volume characteristics
Analysis of macromolecular/small-molecule binding pockets can provide important insights
into molecular recognition and receptor dynamics. Since its release in 2011, the POVME …
into molecular recognition and receptor dynamics. Since its release in 2011, the POVME …
Comprehensive insights into the catalytic mechanism of middle east respiratory syndrome 3C-like protease and severe acute respiratory syndrome 3C-like protease
Coronavirus 3C-like protease (3CLPro) is a highly conserved cysteine protease employing a
catalytic dyad for its functions. 3CLPro is essential to the viral life cycle and, therefore, is an …
catalytic dyad for its functions. 3CLPro is essential to the viral life cycle and, therefore, is an …
Full-length human GLP-1 receptor structure without orthosteric ligands
F Wu, L Yang, K Hang, M Laursen, L Wu… - Nature …, 2020 - nature.com
Abstract Glucagon-like peptide-1 receptor (GLP-1R) is a class BG protein-coupled receptor
that plays an important role in glucose homeostasis and treatment of type 2 diabetes …
that plays an important role in glucose homeostasis and treatment of type 2 diabetes …