Integrating transcriptome and proteome profiling: Strategies and applications

D Kumar, G Bansal, A Narang, T Basak, T Abbas… - …, 2016 - Wiley Online Library
Discovering the gene expression signature associated with a cellular state is one of the
basic quests in majority of biological studies. For most of the clinical and cellular …

Protein N-terminal acetylation: structural basis, mechanism, versatility, and regulation

S Deng, R Marmorstein - Trends in biochemical sciences, 2021 - cell.com
N-terminal acetylation (NTA) is one of the most widespread protein modifications, which
occurs on most eukaryotic proteins, but is significantly less common on bacterial and …

A draft map of the human proteome

MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda… - Nature, 2014 - nature.com
The availability of human genome sequence has transformed biomedical research over the
past decade. However, an equivalent map for the human proteome with direct …

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics

RMM Branca, LM Orre, HJ Johansson, V Granholm… - Nature …, 2014 - nature.com
We present a liquid chromatography–mass spectrometry (LC-MS)-based method permitting
unbiased (gene prediction–independent) genome-wide discovery of protein-coding loci in …

Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis

OT Schubert, C Ludwig, M Kogadeeva… - Cell host & …, 2015 - cell.com
Mycobacterium tuberculosis remains a health concern due to its ability to enter a non-
replicative dormant state linked to drug resistance. Understanding transitions into and out of …

The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis

OT Schubert, J Mouritsen, C Ludwig, HL Röst… - Cell host & …, 2013 - cell.com
Research advancing our understanding of Mycobacterium tuberculosis (Mtb) biology and
complex host-Mtb interactions requires consistent and precise quantitative measurements of …

[HTML][HTML] Alleviation of cadmium phytotoxicity using silicon fertilization in wheat by altering antioxidant metabolism and osmotic adjustment

AO Heile, QU Zaman, Z Aslam, A Hussain, M Aslam… - Sustainability, 2021 - mdpi.com
Humans are facing very serious health threats from food contamination with cadmium (Cd),
and Cd uptake by wheat is amongst the main causes of Cd entrance into the food chain. The …

Proteomic analysis of human follicular fluid: a new perspective towards understanding folliculogenesis

AS Ambekar, RS Nirujogi, SM Srikanth, S Chavan… - Journal of …, 2013 - Elsevier
Human follicular fluid is a complex body fluid that constitutes the microenvironment of
develo** follicles in the ovary. Follicular fluid contains a number of proteins that modulate …

Proteomic analysis of human vitreous humor

KR Murthy, R Goel, Y Subbannayya, HKC Jacob… - Clinical proteomics, 2014 - Springer
Background The vitreous humor is a transparent, gelatinous mass whose main constituent is
water. It plays an important role in providing metabolic nutrient requirements of the lens …

Middle-down approach: a choice to sequence and characterize proteins/proteomes by mass spectrometry

PB Pandeswari, V Sabareesh - RSC advances, 2019 - pubs.rsc.org
Owing to rapid growth in the elucidation of genome sequences of various organisms,
deducing proteome sequences has become imperative, in order to have an improved …