Advances over the past few years have begun to enable prediction and design of
macromolecular structures at near-atomic accuracy. Progress has stemmed from the …

A long standing problem in structural bioinformatics is to determine the three-dimensional (3-
D) structure of a protein when only a sequence of amino acid residues is given. Many …

Abstract JPred4 (http://www. compbio. dundee. ac. uk/jpred4) is the latest version of the
popular JPred protein secondary structure prediction server which provides predictions by …

Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

We developed LOMETS, a local threading meta-server, for quick and automated predictions
of protein tertiary structures and spatial constraints. Nine state-of-the-art threading programs …

For the past ten years, CASP (Critical Assessment of Structure Prediction) has monitored the
state of the art in modeling protein structure from sequence. During this period, there has …

Computational protein–protein docking methods currently can create models with atomic
accuracy for protein complexes provided that the conformational changes upon association …

We develop a new threading algorithm MUSTER by extending the previous sequence
profile–profile alignment method, PPA. It combines various sequence and structure …

Protein sequence alignment is essential for template-based protein structure prediction and
function annotation. We collect 20 sequence alignment algorithms, 10 published and 10 …

Protein structure prediction is an interdisciplinary research topic that has attracted
researchers from multiple fields, including biochemistry, medicine, physics, mathematics …