Quantitative mass spectrometry-based proteomics: an overview

S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …

Data-independent acquisition (DIA): An emerging proteomics technology for analysis of drug-metabolizing enzymes and transporters

J Li, LS Smith, HJ Zhu - Drug Discovery Today: Technologies, 2021 - Elsevier
Data-independent acquisition (DIA) proteomics is a recently-developed global mass
spectrometry (MS)-based proteomics strategy. In a DIA method, precursor ions are isolated …

Role of carboxylesterase and arylacetamide deacetylase in drug metabolism, physiology, and pathology

M Nagaoka, Y Sakai, M Nakajima, T Fukami - Biochemical Pharmacology, 2024 - Elsevier
Abstract Carboxylesterases (CES1 and CES2) and arylacetamide deacetylase (AADAC),
which are expressed primarily in the liver and/or gastrointestinal tract, hydrolyze drugs …

Genome-wide pQTL analysis of protein expression regulatory networks in the human liver

B He, J Shi, X Wang, H Jiang, HJ Zhu - BMC biology, 2020 - Springer
Background Previous expression quantitative trait loci (eQTL) studies have identified
thousands of genetic variants to be associated with gene expression at the mRNA level in …

Carboxylesterase 1 and precision pharmacotherapy: pharmacogenetics and nongenetic regulators

L Her, HJ Zhu - Drug Metabolism and Disposition, 2020 - Elsevier
Carboxylesterase (CES) 1 is the most abundant drug-metabolizing enzyme in human livers,
comprising approximately 1% of the entire liver proteome. CES1 is responsible for 80 …

Differential tissue abundance of membrane-bound drug metabolizing enzymes and transporter proteins by global proteomics

DK Singh, D Ahire, DR Davydov, B Prasad - Drug Metabolism and …, 2024 - Elsevier
Protein abundance data of drug-metabolizing enzymes and transporters (DMETs) are useful
for scaling in vitro and animal data to humans for accurate prediction and interpretation of …

[HTML][HTML] Apolipoprotein E is enriched in dense deposits and is a marker for dense deposit disease in C3 glomerulopathy

B Madden, RD Singh, M Haas, LMP Palma… - Kidney international, 2024 - Elsevier
C3 glomerulopathy (C3G) is a rare disease resulting from dysregulation of the alternative
pathway of complement. C3G includes C3 glomerulonephritis (C3GN) and dense deposit …

Effect of semaglutide and empagliflozin on cognitive function and hippocampal phosphoproteomic in obese mice

X Chen, S Chen, Z Li, R Zhu, Z Jia, J Ban… - Frontiers in …, 2023 - frontiersin.org
Objective: Based on the 4D label-free phosphoproteomic technique, we examined the
differences in cognitive function and hippocampal phosphorylated protein expression in …

Protein profiles and novel molecular biomarkers of schizophrenia based on 4D-DIA proteomics

H Shen, X Dong, Z Li, J Wu, C Zheng… - Journal of Proteome …, 2024 - ACS Publications
Schizophrenia is a severe psychological disorder. The current diagnosis mainly relies on
clinical symptoms and lacks laboratory evidence, which makes it very difficult to make an …

Melatonin elevated Sclerotinia sclerotiorum resistance via modulation of ATP and glucosinolate biosynthesis in Brassica rapa ssp. pekinensis

Z Teng, Y Yu, Z Zhu, SB Hong, B Yang, Y Zang - Journal of proteomics, 2021 - Elsevier
Sclerotinia stem rot is a common disease found in Brassica rapa that is caused by the
necrotic plant pathogen Sclerotinia sclerotiorum. Melatonin (MT) has known biological …