Computer modeling of halogen bonds and other σ-hole interactions

MH Kolar, P Hobza - Chemical reviews, 2016 - ACS Publications
In the field of noncovalent interactions a new paradigm has recently become popular. It
stems from the analysis of molecular electrostatic potentials and introduces a label, which …

Empirical scoring functions for structure-based virtual screening: applications, critical aspects, and challenges

IA Guedes, FSS Pereira, LE Dardenne - Frontiers in pharmacology, 2018 - frontiersin.org
Structure-based virtual screening (VS) is a widely used approach that employs the
knowledge of the three-dimensional structure of the target of interest in the design of new …

AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock Vina

MR Koebel, G Schmadeke, RG Posner… - Journal of …, 2016 - Springer
Background Halogen bonding has recently come to play as a target for lead optimization in
rational drug design. However, most docking program don't account for halogen bonding in …

Computational tools to model halogen bonds in medicinal chemistry

MC Ford, PS Ho - Journal of Medicinal Chemistry, 2016 - ACS Publications
The use of halogens in therapeutics dates back to the earliest days of medicine when
seaweed was used as a source of iodine to treat goiters. The incorporation of halogens to …

Interaction nature and computational methods for halogen bonding: a perspective

Z Zhu, Z Xu, W Zhu - Journal of Chemical Information and …, 2020 - ACS Publications
Halogen bonds are noncovalent interactions that have been widely used in many fields,
including drug design, crystal engineering, and material sciences. A clear understanding of …

Molecular Interaction Fields Describing Halogen Bond Formable Areas on Protein Surfaces

D Hayakawa, Y Watanabe… - Journal of Chemical …, 2024 - ACS Publications
Molecular interaction fields (MIFs) are three-dimensional interaction maps that describe the
intermolecular interactions expected to be formed around target molecules. In this paper, a …

The σ and π holes. The halogen and tetrel bondings: their nature, importance and chemical, biological and medicinal implications

AM Montana - ChemistrySelect, 2017 - Wiley Online Library
The non‐covalent halogen bonding, or simply halogen bonding, is known since last century
and it was slightly explored by several scientists in the fifties. However, the scientific …

Targeting the gatekeeper MET146 of C-Jun N-terminal kinase 3 induces a bivalent halogen/chalcogen bond

A Lange, M Günther, FM Büttner… - Journal of the …, 2015 - ACS Publications
We target the gatekeeper MET146 of c-Jun N-terminal kinase 3 (JNK3) to exemplify the
applicability of X··· S halogen bonds in molecular design using computational, synthetic …

Halogen bonding in halocarbon-protein complexes and computational tools for rational drug design

PJ Costa, R Nunes, D Vila-Viçosa - Expert Opinion on Drug …, 2019 - Taylor & Francis
Introduction: Halogens have a prominent role in drug design. Often used as a mean to
improve ADME properties, they are also becoming a tool in protein–ligand recognition given …

Design and synthesis of phthalazine-based compounds as potent anticancer agents with potential antiangiogenic activity via VEGFR-2 inhibition

S Elmeligie, AM Aboul-Magd, DS Lasheen… - Journal of Enzyme …, 2019 - Taylor & Francis
In the designed compounds, either a biarylamide or biarylurea moiety or an N-substituted
piperazine motif was linked to position 1 of the phthalazine core. The anti-proliferative …