BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets

R Vos de Wael, O Benkarim, C Paquola… - Communications …, 2020‏ - nature.com
Understanding how cognitive functions emerge from brain structure depends on quantifying
how discrete regions are integrated within the broader cortical landscape. Recent work …

Tractostorm: The what, why, and how of tractography dissection reproducibility

F Rheault, A De Benedictis, A Daducci… - Human brain …, 2020‏ - Wiley Online Library
Investigative studies of white matter (WM) brain structures using diffusion MRI (dMRI)
tractography frequently require manual WM bundle segmentation, often called “virtual …

Local spectral graph convolution for point set feature learning

C Wang, B Samari, K Siddiqi - Proceedings of the European …, 2018‏ - openaccess.thecvf.com
Feature learning on point clouds has shown great promise, with the introduction of effective
and generalizable deep learning frameworks such as pointnet++. Thus far, however, point …

DeepNAT: Deep convolutional neural network for segmenting neuroanatomy

C Wachinger, M Reuter, T Klein - NeuroImage, 2018‏ - Elsevier
We introduce DeepNAT, a 3D Deep convolutional neural network for the automatic
segmentation of NeuroAnaTomy in T1-weighted magnetic resonance images. DeepNAT is …

BrainPrint: A discriminative characterization of brain morphology

C Wachinger, P Golland, W Kremen, B Fischl, M Reuter… - NeuroImage, 2015‏ - Elsevier
We introduce BrainPrint, a compact and discriminative representation of brain morphology.
BrainPrint captures shape information of an ensemble of cortical and subcortical structures …

Optimal mass transport for shape matching and comparison

Z Su, Y Wang, R Shi, W Zeng, J Sun… - IEEE transactions on …, 2015‏ - ieeexplore.ieee.org
Surface based 3D shape analysis plays a fundamental role in computer vision and medical
imaging. This work proposes to use optimal mass transport map for shape matching and …

Spectral log-demons: diffeomorphic image registration with very large deformations

H Lombaert, L Grady, X Pennec, N Ayache… - International journal of …, 2014‏ - Springer
This paper presents a new framework for capturing large and complex deformations in
image registration and atlas construction. This challenging and recurrent problem in …

[HTML][HTML] Three-dimensional MRI-based statistical shape model and application to a cohort of knees with acute ACL injury

V Pedoia, DA Lansdown, M Zaid, CE McCulloch… - Osteoarthritis and …, 2015‏ - Elsevier
Objective The aim of this study is to develop a novel 3D magnetic resonance imaging (MRI)-
based Statistical Shape Modeling (SSM) and apply it in knee MRIs in order to extract and …

Large‐Scale Analysis of Meniscus Morphology as Risk Factor for Knee Osteoarthritis

KT Gao, E **e, V Chen, C Iriondo… - Arthritis & …, 2023‏ - Wiley Online Library
Objective Although it is established that structural damage of the meniscus is linked to knee
osteoarthritis (OA) progression, the predisposition to future development of OA because of …

Shape analysis of the human brain: a brief survey

MJ Nitzken, MF Casanova, G Gimel'farb… - IEEE journal of …, 2014‏ - ieeexplore.ieee.org
The survey outlines and compares popular computational techniques for quantitative
description of shapes of major structural parts of the human brain, including medial axis and …