[HTML][HTML] Recent advances in green synthesized nanoparticles: From production to application

A Hosseingholian, SD Gohari, F Feirahi… - Materials Today …, 2023 - Elsevier
With the increasing concern over the environmental impact of conventional chemical
methods, environmentally friendly processes, commonly known as green chemistry, for the …

Machine-learning methods for ligand–protein molecular docking

K Crampon, A Giorkallos, M Deldossi, S Baud… - Drug discovery today, 2022 - Elsevier
Artificial intelligence (AI) is often presented as a new Industrial Revolution. Many domains
use AI, including molecular simulation for drug discovery. In this review, we provide an …

Molecular docking: principles, advances, and its applications in drug discovery

MT Muhammed, E Aki-Yalcin - Letters in Drug Design & …, 2024 - benthamdirect.com
Molecular docking is a structure-based computational method that generates the binding
pose and affinity between ligands and targets. There are many powerful docking programs …

Research advances of molecular docking and molecular dynamic simulation in recognizing interaction between muscle proteins and exogenous additives

G Bai, Y Pan, Y Zhang, Y Li, J Wang, Y Wang, W Teng… - Food Chemistry, 2023 - Elsevier
During storage and processing, muscle proteins, eg myosin and myoglobin, will inevitably
undergo degeneration, which is thus accompanied by quality deterioration of muscle foods …

Screening of potential inhibitors targeting the main protease structure of SARS-CoV-2 via molecular docking, and approach with molecular dynamics, RMSD, RMSF, H …

AM da Fonseca, BJ Caluaco, JMC Madureira… - Molecular …, 2024 - Springer
Abstract Severe Acute Respiratory Syndrome caused by a coronavirus is a recent viral
infection. There is no scientific evidence or clinical trials to indicate that possible therapies …

Protein–ligand docking in the machine-learning era

C Yang, EA Chen, Y Zhang - Molecules, 2022 - mdpi.com
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …

Deep learning model for efficient protein–ligand docking with implicit side-chain flexibility

MR Masters, AH Mahmoud, Y Wei… - Journal of Chemical …, 2023 - ACS Publications
Protein–ligand docking is an essential tool in structure-based drug design with applications
ranging from virtual high-throughput screening to pose prediction for lead optimization. Most …

A scientometric analysis of research progress and trends in the design of laccase biocatalysts for the decolorization of synthetic dyes

AFS Rodrigues, AF da Silva, FLB da Silva… - Process …, 2023 - Elsevier
This article conducted an advanced and comprehensive scientometric analysis of worldwide
trends in decolorizing synthetic dyes by laccase. Articles were collected, analyzed, and …

Improving gas-water interface properties and bioactivities of α-lactalbumin induced by three structurally different saponins

Y Huang, J Li, Y Liu, MA Gantumur, N Sukhbaatar… - Food …, 2023 - Elsevier
Abstract Characterization of binding interactions, gas-water interface properties and
bioactivities in α-lactalbumin (αLa) with tea saponin (Ts), gynostemma saponin (Gyp) and …

Occurrence and toxicity mechanisms of perfluorobutanoic acid (PFBA) and perfluorobutane sulfonic acid (PFBS) in fish

E Ivantsova, A Lu, CJ Martyniuk - Chemosphere, 2024 - Elsevier
Perfluorobutanoic acid (PFBA) and perfluorobutane sulfonic acid (PFBS) are short-chain
perfluoroalkyl substances (PFAS) ubiquitous in the environment. Here we review data on the …