I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
Most proteins in cells are composed of multiple folding units (or domains) to perform
complex functions in a cooperative manner. Relative to the rapid progress in single-domain …
complex functions in a cooperative manner. Relative to the rapid progress in single-domain …
Accurate prediction of protein structures and interactions using a three-track neural network
DeepMind presented notably accurate predictions at the recent 14th Critical Assessment of
Structure Prediction (CASP14) conference. We explored network architectures that …
Structure Prediction (CASP14) conference. We explored network architectures that …
Baculovirus molecular biology
GF Rohrmann - 2019 - ir.library.oregonstate.edu
This is the 4th edition of a book that was initiated with the annotation of the function of all the
genes in the most commonly studied baculovirus, AcMNPV. It has been almost six years …
genes in the most commonly studied baculovirus, AcMNPV. It has been almost six years …
Improved prediction of protein-protein interactions using AlphaFold2
Predicting the structure of interacting protein chains is a fundamental step towards
understanding protein function. Unfortunately, no computational method can produce …
understanding protein function. Unfortunately, no computational method can produce …
Protein sequence analysis using the MPI bioinformatics toolkit
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) provides
interactive access to a wide range of the best‐performing bioinformatics tools and …
interactive access to a wide range of the best‐performing bioinformatics tools and …
[HTML][HTML] An expanded arsenal of immune systems that protect bacteria from phages
Bacterial anti-phage systems are frequently clustered in microbial genomes, forming
defense islands. This property enabled the recent discovery of multiple defense systems …
defense islands. This property enabled the recent discovery of multiple defense systems …
A functional selection reveals previously undetected anti-phage defence systems in the E. coli pangenome
The ancient, ongoing coevolutionary battle between bacteria and their viruses,
bacteriophages, has given rise to sophisticated immune systems including restriction …
bacteriophages, has given rise to sophisticated immune systems including restriction …
The 2019‐new coronavirus epidemic: evidence for virus evolution
There is a worldwide concern about the new coronavirus 2019‐nCoV as a global public
health threat. In this article, we provide a preliminary evolutionary and molecular …
health threat. In this article, we provide a preliminary evolutionary and molecular …
Mammalian retrovirus-like protein PEG10 packages its own mRNA and can be pseudotyped for mRNA delivery
Eukaryotic genomes contain domesticated genes from integrating viruses and mobile
genetic elements. Among these are homologs of the capsid protein (known as Gag) of long …
genetic elements. Among these are homologs of the capsid protein (known as Gag) of long …
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Millions of new viral sequences have been identified from metagenomes, but the quality and
completeness of these sequences vary considerably. Here we present CheckV, an …
completeness of these sequences vary considerably. Here we present CheckV, an …