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Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research
Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae
(encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus …
(encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus …
Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases
Organohalide respiration is an anaerobic bacterial respiratory process that uses
halogenated hydrocarbons as terminal electron acceptors during electron transport-based …
halogenated hydrocarbons as terminal electron acceptors during electron transport-based …
SMS: smart model selection in PhyML
V Lefort, JE Longueville… - Molecular biology and …, 2017 - academic.oup.com
Abstract Model selection using likelihood-based criteria (eg, AIC) is one of the first steps in
phylogenetic analysis. One must select both a substitution matrix and a model for rates …
phylogenetic analysis. One must select both a substitution matrix and a model for rates …
Unusual biology across a group comprising more than 15% of domain Bacteria
A prominent feature of the bacterial domain is a radiation of major lineages that are defined
as candidate phyla because they lack isolated representatives. Bacteria from these phyla …
as candidate phyla because they lack isolated representatives. Bacteria from these phyla …
ModelFinder: fast model selection for accurate phylogenetic estimates
Abstract Model-based molecular phylogenetics plays an important role in comparisons of
genomic data, and model selection is a key step in all such analyses. We present …
genomic data, and model selection is a key step in all such analyses. We present …
Six reference-quality genomes reveal evolution of bat adaptations
Bats possess extraordinary adaptations, including flight, echolocation, extreme longevity
and unique immunity. High-quality genomes are crucial for understanding the molecular …
and unique immunity. High-quality genomes are crucial for understanding the molecular …
Early life dynamics of the human gut virome and bacterial microbiome in infants
The early years of life are important for immune development and influence health in
adulthood. Although it has been established that the gut bacterial microbiome is rapidly …
adulthood. Although it has been established that the gut bacterial microbiome is rapidly …
Scallop genome provides insights into evolution of bilaterian karyotype and development
S Wang, J Zhang, W Jiao, JI Li, X Xun, Y Sun… - Nature ecology & …, 2017 - nature.com
Reconstructing the genomes of bilaterian ancestors is central to our understanding of animal
evolution, where knowledge from ancient and/or slow-evolving bilaterian lineages is critical …
evolution, where knowledge from ancient and/or slow-evolving bilaterian lineages is critical …
Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility
DP LePage, JA Metcalf, SR Bordenstein, J On… - Nature, 2017 - nature.com
The genus Wolbachia is an archetype of maternally inherited intracellular bacteria that infect
the germline of numerous invertebrate species worldwide. They can selfishly alter arthropod …
the germline of numerous invertebrate species worldwide. They can selfishly alter arthropod …
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …