Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research

ML Nibert, SA Ghabrial, E Maiss, T Lesker, EJ Vainio… - Virus research, 2014 - Elsevier
Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae
(encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus …

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

LA Hug, F Maphosa, D Leys… - … of the Royal …, 2013 - royalsocietypublishing.org
Organohalide respiration is an anaerobic bacterial respiratory process that uses
halogenated hydrocarbons as terminal electron acceptors during electron transport-based …

SMS: smart model selection in PhyML

V Lefort, JE Longueville… - Molecular biology and …, 2017 - academic.oup.com
Abstract Model selection using likelihood-based criteria (eg, AIC) is one of the first steps in
phylogenetic analysis. One must select both a substitution matrix and a model for rates …

Unusual biology across a group comprising more than 15% of domain Bacteria

CT Brown, LA Hug, BC Thomas, I Sharon, CJ Castelle… - Nature, 2015 - nature.com
A prominent feature of the bacterial domain is a radiation of major lineages that are defined
as candidate phyla because they lack isolated representatives. Bacteria from these phyla …

ModelFinder: fast model selection for accurate phylogenetic estimates

S Kalyaanamoorthy, BQ Minh, TKF Wong… - Nature …, 2017 - nature.com
Abstract Model-based molecular phylogenetics plays an important role in comparisons of
genomic data, and model selection is a key step in all such analyses. We present …

Six reference-quality genomes reveal evolution of bat adaptations

D Jebb, Z Huang, M Pippel, GM Hughes… - Nature, 2020 - nature.com
Bats possess extraordinary adaptations, including flight, echolocation, extreme longevity
and unique immunity. High-quality genomes are crucial for understanding the molecular …

Early life dynamics of the human gut virome and bacterial microbiome in infants

ES Lim, Y Zhou, G Zhao, IK Bauer, L Droit, IM Ndao… - Nature medicine, 2015 - nature.com
The early years of life are important for immune development and influence health in
adulthood. Although it has been established that the gut bacterial microbiome is rapidly …

Scallop genome provides insights into evolution of bilaterian karyotype and development

S Wang, J Zhang, W Jiao, JI Li, X Xun, Y Sun… - Nature ecology & …, 2017 - nature.com
Reconstructing the genomes of bilaterian ancestors is central to our understanding of animal
evolution, where knowledge from ancient and/or slow-evolving bilaterian lineages is critical …

Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility

DP LePage, JA Metcalf, SR Bordenstein, J On… - Nature, 2017 - nature.com
The genus Wolbachia is an archetype of maternally inherited intracellular bacteria that infect
the germline of numerous invertebrate species worldwide. They can selfishly alter arthropod …

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

M Gerdol, R Moreira, F Cruz, J Gómez-Garrido… - Genome biology, 2020 - Springer
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …