Virus diversity and interactions with hosts in deep-sea hydrothermal vents

R Cheng, X Li, L Jiang, L Gong, C Geslin, Z Shao - Microbiome, 2022 - Springer
Background The deep sea harbors many viruses, yet their diversity and interactions with
hosts in hydrothermal ecosystems are largely unknown. Here, we analyzed the viral …

Chemolithoautotroph distributions across the subsurface of a convergent margin

TJ Rogers, J Buongiorno, GL Jessen… - The ISME …, 2023 - academic.oup.com
Subducting oceanic crusts release fluids rich in biologically relevant compounds into the
overriding plate, fueling subsurface chemolithoautotrophic ecosystems. To understand the …

Functional and molecular approaches for studying and controlling microbial communities in anaerobic digestion of organic waste: a review

N Dinova, W Peng, M Kirilova-Belouhova, C Li… - … Science and Bio …, 2023 - Springer
Anaerobic digestion (AD) has been studied for centuries, but its operation still mainly relies
on physicochemical indicators. Recent advanced molecular biological tools can unveil the …

Genome-resolved metagenomics and metatranscriptomics reveal that Aquificae dominates arsenate reduction in Tengchong geothermal springs

Z Yin, L Ye, C **g - Environmental science & technology, 2022 - ACS Publications
Elevated arsenic (As) is common in geothermal springs, sha** the evolution of As
metabolism genes and As transforming microbes. Herein, genome-level microbial …

[HTML][HTML] The influences of bioinformatics tools and reference databases in analyzing the human oral microbial community

MA Sierra, Q Li, S Pushalkar, B Paul, TA Sandoval… - Genes, 2020 - mdpi.com
There is currently no criterion to select appropriate bioinformatics tools and reference
databases for analysis of 16S rRNA amplicon data in the human oral microbiome. Our study …

The subseafloor crustal biosphere: Ocean's hidden biogeochemical reactor

A Robador - Frontiers in Microbiology, 2024 - frontiersin.org
Underlying the thick sediment layer in ocean basins, the flow of seawater through the
cracked and porous upper igneous crust supports a previously hidden and largely …

A genus in the bacterial phylum Aquificota appears to be endemic to Aotearoa-New Zealand

JF Power, CR Carere, HE Welford, DT Hudson… - Nature …, 2024 - nature.com
Allopatric speciation has been difficult to examine among microorganisms, with prior reports
of endemism restricted to sub-genus level taxa. Previous microbial community analysis via …

Genome‐resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep‐sea hydrothermal …

D Galambos, RE Anderson… - Environmental …, 2019 - Wiley Online Library
The structure and function of microbial communities inhabiting the subseafloor near
hydrothermal systems are influenced by fluid geochemistry, geologic setting and fluid flux …

Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents

SK Hu, EL Herrera, AR Smith, MG Pachiadaki… - Proceedings of the …, 2021 - pnas.org
Microbial eukaryotes (or protists) in marine ecosystems are a link between primary
producers and all higher trophic levels, and the rate at which heterotrophic protistan grazers …