Clustering algorithms in biomedical research: a review

R Xu, DC Wunsch - IEEE reviews in biomedical engineering, 2010 - ieeexplore.ieee.org
Applications of clustering algorithms in biomedical research are ubiquitous, with typical
examples including gene expression data analysis, genomic sequence analysis, biomedical …

Bipartite graphs in systems biology and medicine: a survey of methods and applications

GA Pavlopoulos, PI Kontou, A Pavlopoulou… - …, 2018 - academic.oup.com
The latest advances in high-throughput techniques during the past decade allowed the
systems biology field to expand significantly. Today, the focus of biologists has shifted from …

[HTML][HTML] Biclustering on expression data: A review

B Pontes, R Giráldez, JS Aguilar-Ruiz - Journal of biomedical informatics, 2015 - Elsevier
Biclustering has become a popular technique for the study of gene expression data,
especially for discovering functionally related gene sets under different subsets of …

A comparative analysis of biclustering algorithms for gene expression data

K Eren, M Deveci, O Küçüktunç… - Briefings in …, 2013 - academic.oup.com
The need to analyze high-dimension biological data is driving the development of new data
mining methods. Biclustering algorithms have been successfully applied to gene expression …

Biclustering via sparse singular value decomposition

M Lee, H Shen, JZ Huang, JS Marron - Biometrics, 2010 - academic.oup.com
Sparse singular value decomposition (SSVD) is proposed as a new exploratory analysis tool
for biclustering or identifying interpretable row–column associations within high-dimensional …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

Clustering high dimensional data

I Assent - Wiley Interdisciplinary Reviews: Data Mining and …, 2012 - Wiley Online Library
High‐dimensional data, ie, data described by a large number of attributes, pose specific
challenges to clustering. The so‐called 'curse of dimensionality', coined originally to …

Metaheuristic Biclustering Algorithms: From State-of-the-Art to Future Opportunities

A José-García, J Jacques, V Sobanski… - ACM Computing …, 2023 - dl.acm.org
Biclustering is an unsupervised machine-learning technique that simultaneously clusters
rows and columns in a data matrix. Over the past two decades, the field of biclustering has …

Exact clustering in tensor block model: Statistical optimality and computational limit

R Han, Y Luo, M Wang, AR Zhang - Journal of the Royal …, 2022 - academic.oup.com
High-order clustering aims to identify heterogeneous substructures in multiway datasets that
arise commonly in neuroimaging, genomics, social network studies, etc. The non-convex …

Convex biclustering

EC Chi, GI Allen, RG Baraniuk - Biometrics, 2017 - academic.oup.com
In the biclustering problem, we seek to simultaneously group observations and features.
While biclustering has applications in a wide array of domains, ranging from text mining to …