How biology handles nitrite

LB Maia, JJG Moura - Chemical Reviews, 2014 - ACS Publications
Nitrite is one of the players in the broad nitrogen biogeochemical cycle. This nitrogen oxo-
anion is involved in key pathways crucial to life on Earth and to the planetary “recycling” of …

TGF-β family co-receptor function and signaling

J Nickel, P Ten Dijke, TD Mueller - Acta biochimica et …, 2018 - academic.oup.com
Transforming growth factor-β (TGF-β) family members, which include TGF-βs, activins and
bone morphogenetic proteins, are pleiotropic cytokines that elicit cell type-specific effects in …

[HTML][HTML] Predicting drug response and synergy using a deep learning model of human cancer cells

BM Kuenzi, J Park, SH Fong, KS Sanchez, J Lee… - Cancer cell, 2020 - cell.com
Most drugs entering clinical trials fail, often related to an incomplete understanding of the
mechanisms governing drug response. Machine learning techniques hold immense promise …

Using deep learning to model the hierarchical structure and function of a cell

J Ma, MK Yu, S Fong, K Ono, E Sage, B Demchak… - Nature …, 2018 - nature.com
Although artificial neural networks are powerful classifiers, their internal structures are hard
to interpret. In the life sciences, extensive knowledge of cell biology provides an opportunity …

ER stress, the unfolded protein response and osteoclastogenesis: a review

W Huang, Y Gong, L Yan - Biomolecules, 2023 - mdpi.com
Endoplasmic reticulum (ER) stress and its adaptive mechanism, the unfolded protein
response (UPR), are triggered by the accumulation of unfolded and misfolded proteins …

Moonlighting enzymes: when cellular context defines specificity

MN Gupta, VN Uversky - Cellular and Molecular Life Sciences, 2023 - Springer
It is not often realized that the absolute protein specificity is an exception rather than a rule.
Two major kinds of protein multi-specificities are promiscuity and moonlighting. This review …

Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness

L Pedrotti, C Weiste, T Nägele, E Wolf, F Lorenzin… - The Plant …, 2018 - academic.oup.com
Sustaining energy homeostasis is of pivotal importance for all living organisms. In
Arabidopsis thaliana, evolutionarily conserved SnRK1 kinases (Snf1-RELATED KINASE1) …

Interrogating the Plasmodium Sporozoite Surface: Identification of Surface-Exposed Proteins and Demonstration of Glycosylation on CSP and TRAP by Mass …

KE Swearingen, SE Lindner, L Shi, MJ Shears… - PLoS …, 2016 - journals.plos.org
Malaria parasite infection is initiated by the mosquito-transmitted sporozoite stage, a highly
motile invasive cell that targets hepatocytes in the liver for infection. A promising approach to …

Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective

C Chagnot, MA Zorgani, T Astruc… - Frontiers in …, 2013 - frontiersin.org
Bacterial colonization of biotic or abiotic surfaces results from two quite distinct physiological
processes, namely bacterial adhesion and biofilm formation. Broadly speaking, a biofilm is …

Mechanisms of protein evolution

V Jayaraman, S Toledo‐Patiño, L Noda‐García… - Protein …, 2022 - Wiley Online Library
How do proteins evolve? How do changes in sequence mediate changes in protein
structure, and in turn in function? This question has multiple angles, ranging from …