Fluorescence in situ hybridization in plants: recent developments and future applications

J Jiang - Chromosome Research, 2019 - Springer
Fluorescence in situ hybridization (FISH) was developed more than 30 years ago and has
been the most paradigm-changing technique in cytogenetic research. FISH has been used …

Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes

X Zhang, T Liu, J Wang, P Wang, Y Qiu, W Zhao… - Molecular Plant, 2021 - cell.com
Post-polyploid diploidization associated with descending dysploidy and interspecific
introgression drives plant genome evolution by unclear mechanisms. Raphanus is an …

Chromosome evolution in connection with repetitive sequences and epigenetics in plants

SF Li, T Su, GQ Cheng, BX Wang, X Li, CL Deng… - Genes, 2017 - mdpi.com
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of
chromosome size, structure and shape, number, and the change in DNA composition …

The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and …

M Said, E Hřibová, TV Danilova, M Karafiátová… - Theoretical and Applied …, 2018 - Springer
Key message Fluorescence in situ hybridization with probes for 45 cDNAs and five tandem
repeats revealed homoeologous relationships of Agropyron cristatum with wheat. The …

The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads

Q Liu, X Li, X Zhou, M Li, F Zhang, T Schwarzacher… - BMC plant biology, 2019 - Springer
Background Repetitive DNA motifs–not coding genetic information and repeated millions to
hundreds of times–make up the majority of many genomes. Here, we identify the nature …

[HTML][HTML] The epigenetic regulation of centromeres and telomeres in plants and animals

M Achrem, I Szućko, A Kalinka - Comparative Cytogenetics, 2020 - ncbi.nlm.nih.gov
The centromere is a chromosomal region where the kinetochore is formed, which is the
attachment point of spindle fibers. Thus, it is responsible for the correct chromosome …

Genome-wide analysis of transposable elements and satellite DNA in Humulus scandens, a dioecious plant with XX/XY1Y2 chromosomes

GJ Zhang, KL Jia, J Wang, WJ Gao, SF Li - Frontiers in Plant Science, 2023 - frontiersin.org
Transposable elements (TEs) and satellite DNAs, two major categories of repetitive
sequences, are expected to accumulate in non-recombining genome regions, including sex …

Oligonucleotide Fluorescence In Situ Hybridization: An Efficient Chromosome Painting Method in Plants

A Harun, H Liu, S Song, S Asghar, X Wen, Z Fang… - Plants, 2023 - mdpi.com
Fluorescence in situ hybridization (FISH) is an indispensable technique for studying
chromosomes in plants. However, traditional FISH methods, such as BAC, rDNA, tandem …

Plant kinetochore complex: Composition, function, and regulation

Y **e, M Wang, B Mo, C Liang - Frontiers in Plant Science, 2024 - frontiersin.org
The kinetochore complex, an important protein assembly situated on the centromere, plays a
pivotal role in chromosome segregation during cell division. Like in animals and fungi, the …