[HTML][HTML] A new era for plant science: spatial single-cell transcriptomics

S Giacomello - Current opinion in plant biology, 2021 - Elsevier
To achieve a complete understanding of how organisms function, there is a need to study
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …

Bacterial vector-borne plant diseases: unanswered questions and future directions

W Huang, P Reyes-Caldas, M Mann, S Seifbarghi… - Molecular plant, 2020 - cell.com
Vector-borne plant diseases have significant ecological and economic impacts, affecting
farm profitability and forest composition throughout the world. Bacterial vector-borne …

A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data

M Neumann, X Xu, C Smaczniak, J Schumacher… - Nature …, 2022 - nature.com
Cellular heterogeneity in growth and differentiation results in organ patterning. Single-cell
transcriptomics allows characterization of gene expression heterogeneity in develo** …

[HTML][HTML] Single-cell transcriptome analysis dissects lncRNA-associated gene networks in Arabidopsis

Z He, Y Lan, X Zhou, B Yu, T Zhu, F Yang, LY Fu… - Plant …, 2024 - cell.com
The plant genome produces an extremely large collection of long noncoding RNAs
(lncRNAs) that are generally expressed in a context-specific manner and have pivotal roles …

[HTML][HTML] The 3D genome: from structure to function

TK Mohanta, AK Mishra, A Al-Harrasi - International Journal of Molecular …, 2021 - mdpi.com
The genome is the most functional part of a cell, and genomic contents are organized in a
compact three-dimensional (3D) structure. The genome contains millions of nucleotide …

A rapid and sensitive, multiplex, whole mount RNA fluorescence in situ hybridization and immunohistochemistry protocol

T Huang, B Guillotin, R Rahni, KD Birnbaum, D Wagner - Plant Methods, 2023 - Springer
Background In the past few years, there has been an explosion in single-cell transcriptomics
datasets, yet in vivo confirmation of these datasets is hampered in plants due to lack of …

[HTML][HTML] Applications for single-cell and spatial transcriptomics in plant research

Q Sang, F Kong - New Crops, 2024 - Elsevier
Cells of multicellular plants possess inherent heterogeneity. Recent progress in single-cell
RNA sequencing (scRNA-seq) allows researchers to classify, characterize, and distinguish …

Early detection of late blight in potato by whole‐plant redox imaging

M Hipsch, Y Michael, N Lampl, O Sapir… - The Plant …, 2023 - Wiley Online Library
Late blight caused by the oomycete Phytophthora infestans is a most devastating disease of
potatoes (Solanum tuberosum). Its early detection is crucial for suppressing disease spread …

[HTML][HTML] OMICs, epigenetics, and genome editing techniques for food and nutritional security

YV Gogolev, S Ahmar, BA Akpinar, H Budak… - Plants, 2021 - mdpi.com
The incredible success of crop breeding and agricultural innovation in the last century
greatly contributed to the Green Revolution, which significantly increased yields and …

BUZZ: an essential gene for postinitiation root hair growth and a mediator of root architecture in Brachypodium distachyon

TA Lehman, MA Rosas, RAT Brew‐Appiah… - New …, 2023 - Wiley Online Library
Here, we discover a player in root development. Recovered from a forward‐genetic screen
in Brachypodium distachyon, the buzz mutant initiates root hairs but they fail to elongate. In …