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[HTML][HTML] A new era for plant science: spatial single-cell transcriptomics
S Giacomello - Current opinion in plant biology, 2021 - Elsevier
To achieve a complete understanding of how organisms function, there is a need to study
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …
Bacterial vector-borne plant diseases: unanswered questions and future directions
Vector-borne plant diseases have significant ecological and economic impacts, affecting
farm profitability and forest composition throughout the world. Bacterial vector-borne …
farm profitability and forest composition throughout the world. Bacterial vector-borne …
A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data
Cellular heterogeneity in growth and differentiation results in organ patterning. Single-cell
transcriptomics allows characterization of gene expression heterogeneity in develo** …
transcriptomics allows characterization of gene expression heterogeneity in develo** …
[HTML][HTML] Single-cell transcriptome analysis dissects lncRNA-associated gene networks in Arabidopsis
Z He, Y Lan, X Zhou, B Yu, T Zhu, F Yang, LY Fu… - Plant …, 2024 - cell.com
The plant genome produces an extremely large collection of long noncoding RNAs
(lncRNAs) that are generally expressed in a context-specific manner and have pivotal roles …
(lncRNAs) that are generally expressed in a context-specific manner and have pivotal roles …
[HTML][HTML] The 3D genome: from structure to function
The genome is the most functional part of a cell, and genomic contents are organized in a
compact three-dimensional (3D) structure. The genome contains millions of nucleotide …
compact three-dimensional (3D) structure. The genome contains millions of nucleotide …
A rapid and sensitive, multiplex, whole mount RNA fluorescence in situ hybridization and immunohistochemistry protocol
Background In the past few years, there has been an explosion in single-cell transcriptomics
datasets, yet in vivo confirmation of these datasets is hampered in plants due to lack of …
datasets, yet in vivo confirmation of these datasets is hampered in plants due to lack of …
[HTML][HTML] Applications for single-cell and spatial transcriptomics in plant research
Q Sang, F Kong - New Crops, 2024 - Elsevier
Cells of multicellular plants possess inherent heterogeneity. Recent progress in single-cell
RNA sequencing (scRNA-seq) allows researchers to classify, characterize, and distinguish …
RNA sequencing (scRNA-seq) allows researchers to classify, characterize, and distinguish …
Early detection of late blight in potato by whole‐plant redox imaging
Late blight caused by the oomycete Phytophthora infestans is a most devastating disease of
potatoes (Solanum tuberosum). Its early detection is crucial for suppressing disease spread …
potatoes (Solanum tuberosum). Its early detection is crucial for suppressing disease spread …
[HTML][HTML] OMICs, epigenetics, and genome editing techniques for food and nutritional security
The incredible success of crop breeding and agricultural innovation in the last century
greatly contributed to the Green Revolution, which significantly increased yields and …
greatly contributed to the Green Revolution, which significantly increased yields and …
BUZZ: an essential gene for postinitiation root hair growth and a mediator of root architecture in Brachypodium distachyon
TA Lehman, MA Rosas, RAT Brew‐Appiah… - New …, 2023 - Wiley Online Library
Here, we discover a player in root development. Recovered from a forward‐genetic screen
in Brachypodium distachyon, the buzz mutant initiates root hairs but they fail to elongate. In …
in Brachypodium distachyon, the buzz mutant initiates root hairs but they fail to elongate. In …