EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research

YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen… - IMeta, 2023 - Wiley Online Library
It is difficult for beginners to learn and use amplicon analysis software because there are so
many software tools to choose from, and all of them need multiple steps of operation. Herein …

Wekemo Bioincloud: A user‐friendly platform for meta‐omics data analyses

Y Gao, G Zhang, S Jiang, YX Liu - Imeta, 2024 - Wiley Online Library
The increasing application of meta‐omics approaches to investigate the structure, function,
and intercellular interactions of microbial communities has led to a surge in available data …

Maternal gestational diabetes mellitus associates with altered gut microbiome composition and head circumference abnormalities in male offspring

S Wang, Y Liu, WH Tam, JYL Ching, W Xu, S Yan… - Cell Host & Microbe, 2024 - cell.com
The impact of gestational diabetes mellitus (GDM) on maternal or infant microbiome
trajectory remains poorly understood. Utilizing large-scale longitudinal fecal samples from …

Selenium-induced rhizosphere microorganisms endow salt-sensitive soybeans with salt tolerance

Y Wang, C Hu, X Wang, G Shi, Z Lei, Y Tang… - Environmental …, 2023 - Elsevier
Soil salinization is a prevalent abiotic stress that adversely affects soybean production.
Rhizosphere microorganisms have been shown to modulate the rhizosphere …

Difference in microbial community structure along a gradient of crater altitude: insights from the Nushan volcano

J Chen, Y Cui, Q **ao, K Lin, B Wang… - Applied and …, 2024 - journals.asm.org
The variation in the soil microbial community along the altitude gradient has been widely
documented. However, the structure and function of the microbial communities distributed …

Wheat straw hydrochar induced negative priming effect on carbon decomposition in a coastal soil

X Wang, Z Li, Y Cheng, H Yao, H Li, X You, C Zhang… - IMeta, 2023 - Wiley Online Library
Progressive land‐use changes, deforestation, and the excessive combustion of fossil fuels
have increased greenhouse gas (GHG) emissions and the widespread intensification of …

A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics

Y Peng, J Zhu, S Wang, Y Liu, X Liu, O DeLeon… - Cell Host & Microbe, 2024 - cell.com
Existing microbiota databases are biased toward adult samples, hampering accurate
profiling of the infant gut microbiome. Here, we generated a metagenome-assembled …

Biodiversity and network complexity of rhizosphere soil microbiomes regulate the differentiation of Capsicum growth strategies

P Jiang, Y Zhou, K Yang, J Du, Y Zhang, S Yang, G Luo… - Plant and Soil, 2024 - Springer
Background and aims Plant growth strategies represent a gradient from slow to fast
economic strategies. Rhizosphere microbiomes have a continual and profound impact on …

An integrated microbiome-and metabolome-genome-wide association study reveals the role of heritable ruminal microbial carbohydrate metabolism in lactation …

C Zhang, H Liu, X Jiang, Z Zhang, X Hou, Y Wang… - Microbiome, 2024 - Springer
Background Despite the growing number of studies investigating the connection between
host genetics and the rumen microbiota, there remains a dearth of systematic research …

A sexual role in regulation of the assembly of bacterial and arbuscular mycorrhizal fungal communities

Y Zhu, T Dong, F Sun, Y **ao, Q Guo - Plant and Soil, 2024 - Springer
Background and aims Dioecious species appear to be sexually dimorphic and they present
as result distinct responses to environmental settings. However, how and to what extent …