Biological knowledge management: the emerging role of the Semantic Web technologies

E Antezana, M Kuiper, V Mironov - Briefings in bioinformatics, 2009 - academic.oup.com
New knowledge is produced at a continuously increasing speed, and the list of papers,
databases and other knowledge sources that a researcher in the life sciences needs to cope …

[KNYGA][B] Handbook of natural language processing

N Indurkhya, FJ Damerau - 2010 - taylorfrancis.com
The Handbook of Natural Language Processing, Second Edition presents practical tools
and techniques for implementing natural language processing in computer systems. Along …

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

R Winnenburg, T Wächter, C Plake… - Briefings in …, 2008 - academic.oup.com
The biomedical literature can be seen as a large integrated, but unstructured data
repository. Extracting facts from literature and making them accessible is approached from …

An introduction to ontology engineering

CM Keet - 2018 - open.uct.ac.za
Abstract An Introduction to Ontology Engineering is a free online textbook that provides an
overview of ontology engineering, including logics and automated reasoning, methods and …

Semi-automated ontology generation within OBO-Edit

T Wächter, M Schroeder - Bioinformatics, 2010 - academic.oup.com
Motivation: Ontologies and taxonomies have proven highly beneficial for biocuration. The
Open Biomedical Ontology (OBO) Foundry alone lists over 90 ontologies mainly built with …

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

D Alexopoulou, B Andreopoulos, H Dietze, A Doms… - BMC …, 2009 - Springer
Background Ontology term labels can be ambiguous and have multiple senses. While this is
no problem for human annotators, it is a challenge to automated methods, which identify …

A Semantic Web for bioinformatics: goals, tools, systems, applications

N Cannata, M Schröder, R Marangoni, P Romano - BMC bioinformatics, 2008 - Springer
Network Tools and Applications in Biology (NETTAB)[1] is a series of workshops focused on
the most promising and innovative Information and Communication Technologies (ICT) tools …

[HTML][HTML] Transforming semi-structured life science diagrams into meaningful domain ontologies with DiDOn

CM Keet - Journal of biomedical informatics, 2012 - Elsevier
Bio-ontology development is a resource-consuming task despite the many open source
ontologies available for reuse. Various strategies and tools for bottom-up ontology …

[HTML][HTML] Text-mining approach to evaluate terms for ontology development

LC Tsoi, R Patel, W Zhao, WJ Zheng - Journal of biomedical informatics, 2009 - Elsevier
Develo** ontologies to account for the complexity of biological systems requires the time
intensive collaboration of many participants with expertise in various fields. While each …

[PDF][PDF] Technology forecasting using data mining and semantics

S Madnick, WL Woon, A Henschel, A Firat, B Ziegler… - Cambridge, MA, 2008 - mit.edu
For decision makers and researchers working in a technical domain, understanding the
state of their area of interest is of the highest importance. Any given research field is …