Genomic selection and its research progress in aquaculture breeding

H Song, T Dong, X Yan, W Wang, Z Tian… - Reviews in …, 2023 - Wiley Online Library
Since its introduction in 2001, genomic selection (GS) has progressed rapidly. As a research
and application hot topic, GS has led to a revolution in the field of animal and plant breeding …

[PDF][PDF] Current status of genomic evaluation

I Misztal, D Lourenco, A Legarra - Journal of Animal Science, 2020 - academic.oup.com
Early application of genomic selection relied on SNP estimation with phenotypes or de-
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …

HIBLUP: an integration of statistical models on the BLUP framework for efficient genetic evaluation using big genomic data

L Yin, H Zhang, Z Tang, D Yin, Y Fu, X Yuan… - Nucleic acids …, 2023 - academic.oup.com
Human diseases and agricultural traits can be predicted by modeling a genetic random
polygenic effect in linear mixed models. To estimate variance components and predict …

[HTML][HTML] Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90

D Lourenco, A Legarra, S Tsuruta, Y Masuda, KG Dodds, JC McEwan, R Brauning, RM Anderson… - BMC genomics, 2015 - Springer
Background Genoty**-by-sequencing (GBS) is becoming an attractive alternative to array-
based methods for genoty** individuals for a large number of single nucleotide …

Inexpensive computation of the inverse of the genomic relationship matrix in populations with small effective population size

I Misztal - Genetics, 2016 - academic.oup.com
Many computations with SNP data including genomic evaluation, parameter estimation, and
genome-wide association studies use an inverse of the genomic relationship matrix. The …

Incorporation of causative quantitative trait nucleotides in single-step GBLUP

BO Fragomeni, DAL Lourenco, Y Masuda… - Genetics Selection …, 2017 - Springer
Background Much effort is put into identifying causative quantitative trait nucleotides (QTN)
in animal breeding, empowered by the availability of dense single nucleotide polymorphism …

[HTML][HTML] Symposium review: Single-step genomic evaluations in dairy cattle

EA Mäntysaari, M Koivula, I Strandén - Journal of dairy science, 2020 - Elsevier
During the last decade, genomic selection has revolutionized dairy cattle breeding. For
example, Nordic dairy cows (Denmark, Finland, and Sweden) born in 2018 were> 90% sired …

The dimensionality of genomic information and its effect on genomic prediction

I Pocrnic, DAL Lourenco, Y Masuda, A Legarra… - Genetics, 2016 - academic.oup.com
The genomic relationship matrix (GRM) can be inverted by the algorithm for proven and
young (APY) based on recursion on a random subset of animals. While a regular inverse …