Phylogeny to function: PE/PPE protein evolution and impact on Mycobacterium tuberculosis pathogenicity

S Fishbein, N Van Wyk, RM Warren… - Molecular …, 2015 - Wiley Online Library
The pe/ppe genes represent one of the most intriguing aspects of the M ycobacterium
tuberculosis genome. These genes are especially abundant in pathogenic mycobacteria …

Methodological and clinical aspects of the molecular epidemiology of Mycobacterium tuberculosis and other mycobacteria

T Jagielski, A Minias, J van Ingen… - Clinical microbiology …, 2016 - journals.asm.org
Molecular ty** has revolutionized epidemiological studies of infectious diseases,
including those of a mycobacterial etiology. With the advent of fingerprinting techniques …

SITVITWEB–a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

C Demay, B Liens, T Burguière, V Hill, D Couvin… - Infection, genetics and …, 2012 - Elsevier
Among various genoty** methods to study Mycobacterium tuberculosis complex (MTC)
genotypic polymorphism, spoligoty** and mycobacterial interspersed repetitive units …

Identification of New Drug Targets and Resistance Mechanisms in Mycobacterium tuberculosis

TR Ioerger, T O'Malley, R Liao, KM Guinn, MJ Hickey… - PloS one, 2013 - journals.plos.org
Identification of new drug targets is vital for the advancement of drug discovery against
Mycobacterium tuberculosis, especially given the increase of resistance worldwide to first …

The association between insertion sequences and antibiotic resistance genes

M Razavi, E Kristiansson, CF Flach, DGJ Larsson - Msphere, 2020 - journals.asm.org
Insertion sequences (ISs) are abundant mobile genetic elements on bacterial genomes,
responsible for mobilization of many genes, including antibiotic resistance genes (ARGs). As …

Variation among Genome Sequences of H37Rv Strains of Mycobacterium tuberculosis from Multiple Laboratories

TR Ioerger, Y Feng, K Ganesula, X Chen… - Journal of …, 2010 - journals.asm.org
The publication of the complete genome sequence for Mycobacterium tuberculosis H37Rv
in 1998 has had a great impact on the research community. Nonetheless, it is suspected that …

The struggle for life of the genome's selfish architects

A Hua-Van, A Le Rouzic, TS Boutin, J Filée, P Capy - Biology direct, 2011 - Springer
Transposable elements (TEs) were first discovered more than 50 years ago, but were totally
ignored for a long time. Over the last few decades they have gradually attracted increasing …

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

J Hawkey, M Hamidian, RR Wick, DJ Edwards… - BMC genomics, 2015 - Springer
Background Insertion sequences (IS) are small transposable elements, commonly found in
bacterial genomes. Identifying the location of IS in bacterial genomes can be useful for a …

DNA Methylation Impacts Gene Expression and Ensures Hypoxic Survival of Mycobacterium tuberculosis

SS Shell, EG Prestwich, SH Baek, RR Shah… - PLoS …, 2013 - journals.plos.org
DNA methylation regulates gene expression in many organisms. In eukaryotes, DNA
methylation is associated with gene repression, while it exerts both activating and repressive …

After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection

A Namouchi, X Didelot, U Schöck, B Gicquel… - Genome …, 2012 - genome.cshlp.org
Many of the most virulent bacterial pathogens show low genetic diversity and sexual
isolation. Accordingly, Mycobacterium tuberculosis, the deadliest human pathogen, is …