Single-cell RNA-seq: advances and future challenges
AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …
lifespan and this variation is reflected in their molecular composition such as the …
Small RNAs in bacteria and archaea: who they are, what they do, and how they do it
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
CRISPR-mediated adaptive immune systems in bacteria and archaea
Effective clearance of an infection requires that the immune system rapidly detects and
neutralizes invading parasites while strictly avoiding self-antigens that would result in …
neutralizes invading parasites while strictly avoiding self-antigens that would result in …
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
Bacteria adapt to environmental stimuli by adjusting their transcriptomes in a complex
manner, the full potential of which has yet to be established for any individual bacterial …
manner, the full potential of which has yet to be established for any individual bacterial …
Computational analysis of bacterial RNA-Seq data
R McClure, D Balasubramanian, Y Sun… - Nucleic acids …, 2013 - academic.oup.com
Recent advances in high-throughput RNA sequencing (RNA-seq) have enabled
tremendous leaps forward in our understanding of bacterial transcriptomes. However …
tremendous leaps forward in our understanding of bacterial transcriptomes. However …
Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
CRISPR-Cas is an RNA-mediated adaptive immune system that defends bacteria and
archaea against mobile genetic elements. Short mature CRISPR RNAs (crRNAs) are key …
archaea against mobile genetic elements. Short mature CRISPR RNAs (crRNAs) are key …
Transcriptome-wide discovery of circular RNAs in Archaea
Circular RNA forms had been described in all domains of life. Such RNAs were shown to
have diverse biological functions, including roles in the life cycle of viral and viroid genomes …
have diverse biological functions, including roles in the life cycle of viral and viroid genomes …
Cross-species RNA-seq for deciphering host–microbe interactions
AJ Westermann, J Vogel - Nature Reviews Genetics, 2021 - nature.com
The human body is constantly exposed to microorganisms, which entails manifold
interactions between human cells and diverse commensal or pathogenic bacteria. The …
interactions between human cells and diverse commensal or pathogenic bacteria. The …
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
The prokaryotic clusters of regularly interspaced palindromic repeats (CRISPR) system
utilizes genomically encoded CRISPR RNA (crRNA), derived from invading viruses and …
utilizes genomically encoded CRISPR RNA (crRNA), derived from invading viruses and …
Leaderless transcripts and small proteins are common features of the mycobacterial translational landscape
RNA-seq technologies have provided significant insight into the transcription networks of
mycobacteria. However, such studies provide no definitive information on the translational …
mycobacteria. However, such studies provide no definitive information on the translational …