Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

A toolbox of machine learning software to support microbiome analysis

LJ Marcos-Zambrano, VM López-Molina… - Frontiers in …, 2023 - frontiersin.org
The human microbiome has become an area of intense research due to its potential impact
on human health. However, the analysis and interpretation of this data have proven to be …

Machine learning for metagenomics: methods and tools

H Soueidan, M Nikolski - arxiv preprint arxiv:1510.06621, 2015 - arxiv.org
Owing to the complexity and variability of metagenomic studies, modern machine learning
approaches have seen increased usage to answer a variety of question encompassing the …

[HTML][HTML] Mathematical-based microbiome analytics for clinical translation

JK Narayana, M Mac Aogáin, WWB Goh, K **a… - Computational and …, 2021 - Elsevier
Traditionally, human microbiology has been strongly built on the laboratory focused culture
of microbes isolated from human specimens in patients with acute or chronic infection …

Music of metagenomics—A review of its applications, analysis pipeline, and associated tools

B Wajid, F Anwar, I Wajid, H Nisar, S Meraj… - Functional & integrative …, 2022 - Springer
This humble effort highlights the intricate details of metagenomics in a simple, poetic, and
rhythmic way. The paper enforces the significance of the research area, provides details …

Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from …

AY Lee, CS Lee, RN Van Gelder - BMC bioinformatics, 2016 - Springer
Background Next generation sequencing technology has enabled characterization of
metagenomics through massively parallel genomic DNA sequencing. The complexity and …

A Mutual Information Based on Ant Colony Optimization Method to Feature Selection for Categorical Data Clustering

Z Shojaee, SA Shahzadeh Fazeli, E Abbasi… - Iranian Journal of …, 2023 - Springer
By improving feature extraction techniques, high-dimensional datasets emerge more
frequently, in which irrelevant or redundant features may appear. This curse of dimensions …

A genetic algorithm for classifying metagenomic data

J Kawulok, M Kawulok - Proceedings of the Genetic and Evolutionary …, 2022 - dl.acm.org
The goal of metagenomic analysis is to extract relevant information concerning the
organisms that have left their genetic traces in an environmental sample. Each sample is …

[HTML][HTML] 宏基因组样本数据的分析比较与分类

程福东, 丁啸, **晟, 孙啸 - 生物技术通报, 2016 - html.rhhz.net
宏基因组学研究试图通过测序并分析微生物群落的DNA 序列, 以理解环境微生物的组成及其与
环境的交互作用. 宏基因组学革命性地改变了微生物学, 使得以免培养的方式研究复杂生物系统 …

Machine Learning Methods for the Analysis of Metagenomes

VACA Robles - 2020 - search.proquest.com
As of October 2020, there are 18, 6× 10^ 15 DNA base pairs publicly available in the
Sequence Read Archive and this number is growing at an exponential rate. As DNA …