Affinity‐purification coupled to mass spectrometry: Basic principles and strategies

WH Dunham, M Mullin, AC Gingras - Proteomics, 2012 - Wiley Online Library
Identifying the interactions established by a protein of interest can be a critical step in
understanding its function. This is especially true when an unknown protein of interest is …

Recent progress in mass spectrometry proteomics for biomedical research

X Li, W Wang, J Chen - Science China Life Sciences, 2017 - Springer
Proteins are the key players in many cellular processes. Their composition, trafficking, and
interactions underlie the dynamic processes of life. Furthermore, diseases are frequently …

[HTML][HTML] A census of human soluble protein complexes

PC Havugimana, GT Hart, T Nepusz, H Yang… - Cell, 2012 - cell.com
Cellular processes often depend on stable physical associations between proteins. Despite
recent progress, knowledge of the composition of human protein complexes remains limited …

SMN and symmetric arginine dimethylation of RNA polymerase II C-terminal domain control termination

D Yanling Zhao, G Gish, U Braunschweig, Y Li, Z Ni… - Nature, 2016 - nature.com
The carboxy-terminal domain (CTD) of the RNA polymerase II (RNAP II) subunit POLR2A is
a platform for modifications specifying the recruitment of factors that regulate transcription …

Proximity biotinylation and affinity purification are complementary approaches for the interactome map** of chromatin-associated protein complexes

JP Lambert, M Tucholska, C Go, JDR Knight… - Journal of …, 2015 - Elsevier
Map** protein–protein interactions for chromatin-associated proteins remains
challenging. Here we explore the use of BioID, a proximity biotinylation approach in which a …

[HTML][HTML] Regulation of CD133 by HDAC6 promotes β-catenin signaling to suppress cancer cell differentiation

AB Mak, AML Nixon, S Kittanakom, JM Stewart… - Cell reports, 2012 - cell.com
The pentaspan membrane glycoprotein CD133 marks lineage-specific cancer progenitor
cells and is associated with poor prognosis in a number of tumor types. Despite its utility as a …

Protein-protein interaction networks: probing disease mechanisms using model systems

U Kuzmanov, A Emili - Genome medicine, 2013 - Springer
Protein-protein interactions (PPIs) and multi-protein complexes perform central roles in the
cellular systems of all living organisms. In humans, disruptions of the normal patterns of PPIs …

Cancer‐associated somatic DICER1 hotspot mutations cause defective miRNA processing and reverse‐strand expression bias to predominantly mature 3p strands …

MS Anglesio, Y Wang, W Yang, J Senz… - The Journal of …, 2013 - Wiley Online Library
Our group recently described recurrent somatic mutations of the miRNA processing gene
DICER1 in non‐epithelial ovarian cancer. Mutations appeared to be clustered around each …

Cross-regulation between an alternative splicing activator and a transcription repressor controls neurogenesis

B Raj, D O'Hanlon, JP Vessey, Q Pan, D Ray… - Molecular cell, 2011 - cell.com
Neurogenesis requires the concerted action of numerous genes that are regulated at
multiple levels. However, how different layers of gene regulation are coordinated to promote …

A feed forward loop enforces YAP/TAZ signaling during tumorigenesis

MK Gill, T Christova, YY Zhang, A Gregorieff… - Nature …, 2018 - nature.com
In most solid tumors, the Hippo pathway is inactivated through poorly understood
mechanisms that result in the activation of the transcriptional regulators, YAP and TAZ. Here …