Bioremediation options for heavy metal pollution

M Kapahi, S Sachdeva - Journal of health and pollution, 2019 - ehp.niehs.nih.gov
Background. Rapid industrialization and anthropogenic activities such as the unmanaged
use of agro-chemicals, fossil fuel burning and dum** of sewage sludge have caused soils …

Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution

G Janusz, A Pawlik, J Sulej… - FEMS microbiology …, 2017 - academic.oup.com
Extensive research efforts have been dedicated to describing degradation of wood, which is
a complex process; hence, microorganisms have evolved different enzymatic and non …

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

C Hoencamp, O Dudchenko, AMO Elbatsh… - Science, 2021 - science.org
We investigated genome folding across the eukaryotic tree of life. We find two types of three-
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …

[HTML][HTML] What are the 100 most cited fungal genera?

CS Bhunjun, YJ Chen, C Phukhamsakda… - Studies in …, 2024 - ingentaconnect.com
The global diversity of fungi has been estimated between 2 to 11 million species, of which
only about 155 000 have been named. Most fungi are invisible to the unaided eye, but they …

From 13C-lignin to 13C-mycelium: Agaricus bisporus uses polymeric lignin as a carbon source

K Duran, M Kohlstedt, G van Erven… - Science …, 2024 - science.org
Plant biomass conversion by saprotrophic fungi plays a pivotal role in terrestrial carbon (C)
cycling. The general consensus is that fungi metabolize carbohydrates, while lignin is only …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

R Riley, AA Salamov, DW Brown, LG Nagy… - Proceedings of the …, 2014 - pnas.org
Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most
wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

Plant-polysaccharide-degrading enzymes from basidiomycetes

J Rytioja, K Hildén, J Yuzon, A Hatakka… - Microbiology and …, 2014 - journals.asm.org
Basidiomycete fungi subsist on various types of plant material in diverse environments, from
living and dead trees and forest litter to crops and grasses and to decaying plant matter in …

Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi)

F Badotti, FS de Oliveira, CF Garcia, ABM Vaz… - BMC microbiology, 2017 - Springer
Background Fungi are among the most abundant and diverse organisms on Earth. However,
a substantial amount of the species diversity, relationships, habitats, and life strategies of …