Synthetic biology to access and expand nature's chemical diversity

MJ Smanski, H Zhou, J Claesen, B Shen… - Nature Reviews …, 2016 - nature.com
Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of
complex molecules with diverse applications, from medicine to agriculture and materials …

Navigating environmental transitions: the role of phenotypic variation in bacterial responses

MR Spratt, K Lane - MBio, 2022 - journals.asm.org
The ability of bacteria to respond to changes in their environment is critical to their survival,
allowing them to withstand stress, form complex communities, and induce virulence …

Genetic programs constructed from layered logic gates in single cells

TS Moon, C Lou, A Tamsir, BC Stanton, CA Voigt - Nature, 2012 - nature.com
Genetic programs function to integrate environmental sensors, implement signal processing
algorithms and control expression dynamics. These programs consist of integrated genetic …

Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca

K Temme, D Zhao, CA Voigt - Proceedings of the National Academy of …, 2012 - pnas.org
Bacterial genes associated with a single trait are often grouped in a contiguous unit of the
genome known as a gene cluster. It is difficult to genetically manipulate many gene clusters …

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals

EJ Olson, LA Hartsough, BP Landry, R Shroff… - Nature methods, 2014 - nature.com
Gene circuits are dynamical systems that regulate cellular behaviors, often using protein
signals as inputs and outputs. Here we have developed an optogenetic'function …

The Cost of Virulence: Retarded Growth of Salmonella Typhimurium Cells Expressing Type III Secretion System 1

A Sturm, M Heinemann, M Arnoldini, A Benecke… - PLoS …, 2011 - journals.plos.org
Virulence factors generally enhance a pathogen's fitness and thereby foster transmission.
However, most studies of pathogen fitness have been performed by averaging the …

Setting the standard in synthetic biology

A Arkin - Nature biotechnology, 2008 - nature.com
Setting the standard in synthetic biology | Nature Biotechnology Skip to main content Thank you
for visiting nature.com. You are using a browser version with limited support for CSS. To obtain …

Engineering the Salmonella type III secretion system to export spider silk monomers

DM Widmaier, D Tullman‐Ercek, EA Mirsky… - Molecular systems …, 2009 - embopress.org
The type III secretion system (T3SS) exports proteins from the cytoplasm, through both the
inner and outer membranes, to the external environment. Here, a system is constructed to …

The incoherent feed‐forward loop can generate non‐monotonic input functions for genes

S Kaplan, A Bren, E Dekel, U Alon - Molecular systems biology, 2008 - embopress.org
Gene regulation networks contain recurring circuit patterns called network motifs. One of the
most common network motif is the incoherent type 1 feed‐forward loop (I1‐FFL), in which an …

Induction of Salmonella pathogenicity island 1 under different growth conditions can affect Salmonella–host cell interactions in vitro

JA Ibarra, LA Knodler, DE Sturdevant… - …, 2010 - microbiologyresearch.org
Salmonella invade non-phagocytic cells by inducing massive actin rearrangements,
resulting in membrane ruffle formation and phagocytosis of the bacteria. This process is …