Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle

D Hoces, J Lan, W Sun, T Geiser, ML Stäubli… - PLoS …, 2022 - journals.plos.org
The capacity of the intestinal microbiota to degrade otherwise indigestible diet components
is known to greatly improve the recovery of energy from food. This has led to the hypothesis …

Co-toxicity of endotoxin and indoxyl sulfate, gut-derived bacterial metabolites, to vascular endothelial cells in coronary arterial disease accompanied by gut dysbiosis

M Choroszy, B Sobieszczańska, K Litwinowicz… - Nutrients, 2022 - mdpi.com
Gut dysbiosis, alongside a high-fat diet and cigarette smoking, is considered one of the
factors promoting coronary arterial disease (CAD) development. The present study aimed to …

Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data

W Stock, C Rousseau, G Dierickx… - Briefings in …, 2025 - academic.oup.com
Third-generation sequencing platforms, such as Oxford Nanopore Technology (ONT), have
made it possible to characterize communities through the sequencing of long amplicons …

Fungal diversity in sediments of the eastern tropical Pacific oxygen minimum zone revealed by metabarcoding

J Posadas, P Velez, S Pajares, J Gasca-Pineda… - Plos one, 2024 - journals.plos.org
Oxygen minimum zones (OMZ) represent~ 8% of the ocean, with the Pacific as the largest
and top expanding area. These regions influence marine ecosystems, promoting anaerobic …

Evaluation of the Respiratory Microbiome and the Use of Tracheal Lavage as a Diagnostic Tool in Kemp's Ridley Sea Turtles (Lepidochelys kempii)

KL McNally, JL Bowen, JO Brisson, A Kennedy… - Animals, 2021 - mdpi.com
Simple Summary A tracheal lavage is commonly used to characterize the microbes that may
be causing pneumonia in sea turtles, typically by culture-dependent methods. In this study …