Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …

DNA methylation and histone modifications induced by abiotic stressors in plants

K Czajka, M Mehes-Smith, K Nkongolo - Genes & Genomics, 2021 - Springer
Background A review of research shows that methylation in plants is more complex and
sophisticated than in microorganisms and animals. Overall, studies on the effects of abiotic …

Repeated turnovers keep sex chromosomes young in willows

D Wang, Y Li, M Li, W Yang, X Ma, L Zhang, Y Wang… - Genome Biology, 2022 - Springer
Background Salicaceae species have diverse sex determination systems and frequent sex
chromosome turnovers. However, compared with poplars, the diversity of sex determination …

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

BT Hofmeister, J Denkena, M Colomé-Tatché… - Genome Biology, 2020 - Springer
Background Plants can transmit somatic mutations and epimutations to offspring, which in
turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to …

Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica)

Z Zhang, Y Chen, J Zhang, X Ma, Y Li… - Molecular ecology …, 2020 - Wiley Online Library
Populus euphratica is well adapted to extreme desert environments and is an important
model species for elucidating the mechanisms of abiotic stress resistance in trees. The …

Transcriptome and methylome changes in two contrasting mungbean genotypes in response to drought stress

P Zhao, B Ma, C Cai, J Xu - BMC genomics, 2022 - Springer
Background Due to drought stress, the growth, distribution, and production of mungbean is
severely restricted. Previous study combining physiological and transcriptomic data …

Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication

L Zhang, J Zhao, H Bi, X Yang, Z Zhang… - Horticulture …, 2021 - academic.oup.com
The nonrandom three-dimensional organization of chromatin plays an important role in the
regulation of gene expression. However, it remains unclear whether this organization is …

Dormant but Active: Chilling Accumulation Modulates the Epigenome and Transcriptome of Prunus avium During Bud Dormancy

K Rothkegel, P Sandoval, E Soto, L Ulloa… - Frontiers in Plant …, 2020 - frontiersin.org
Temperate deciduous fruit tree species like sweet cherry (Prunus avium) require long
periods of low temperatures to trigger dormancy release and flowering. In addition to …

DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems

Y Zhang, C Liu, H Cheng, S Tian, Y Liu, S Wang… - BMC genomics, 2020 - Springer
Background As an important epigenetic mark, 5-methylcytosine (5mC) methylation is
involved in many DNA-dependent biological processes and plays a role during …

Challenges and perspectives in the epigenetics of climate change-induced forests decline

I García-García, B Méndez-Cea… - Frontiers in Plant …, 2022 - frontiersin.org
Forest tree species are highly vulnerable to the effects of climate change. As sessile
organisms with long generation times, their adaptation to a local changing environment may …