Heterochromatin: guardian of the genome

A Janssen, SU Colmenares… - Annual review of cell and …, 2018 - annualreviews.org
Constitutive heterochromatin is a major component of the eukaryotic nucleus and is
essential for the maintenance of genome stability. Highly concentrated at pericentromeric …

Interplay between chromatin marks in development and disease

SM Janssen, MC Lorincz - Nature Reviews Genetics, 2022 - nature.com
DNA methylation (DNAme) and histone post-translational modifications (PTMs) have
important roles in transcriptional regulation. Although many reports have characterized the …

DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load

H Jung, HS Kim, JY Kim, JM Sun, JS Ahn… - Nature …, 2019 - nature.com
Mitotic cell division increases tumour mutation burden and copy number load, predictive
markers of the clinical benefit of immunotherapy. Cell division correlates also with genomic …

Epigenetic modulators, modifiers and mediators in cancer aetiology and progression

AP Feinberg, MA Koldobskiy, A Göndör - Nature Reviews Genetics, 2016 - nature.com
This year is the tenth anniversary of the publication in this journal of a model suggesting the
existence of'tumour progenitor genes'. These genes are epigenetically disrupted at the …

[HTML][HTML] Large-scale topological changes restrain malignant progression in colorectal cancer

SE Johnstone, A Reyes, Y Qi, C Adriaens, E Hegazi… - Cell, 2020 - cell.com
Widespread changes to DNA methylation and chromatin are well documented in cancer, but
the fate of higher-order chromosomal structure remains obscure. Here we integrated …

Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis

OG McDonald, X Li, T Saunders, R Tryggvadottir… - Nature …, 2017 - nature.com
During the progression of pancreatic ductal adenocarcinoma (PDAC), heterogeneous
subclonal populations emerge that drive primary tumor growth, regional spread, distant …

Underlying features of epigenetic aging clocks in vivo and in vitro

Z Liu, D Leung, K Thrush, W Zhao, S Ratliff… - Aging cell, 2020 - Wiley Online Library
Epigenetic clocks, developed using DNA methylation data, have been widely used to
quantify biological aging in multiple tissues/cells. However, many existing epigenetic clocks …

DNA methylation loss in late-replicating domains is linked to mitotic cell division

W Zhou, HQ Dinh, Z Ramjan, DJ Weisenberger… - Nature …, 2018 - nature.com
DNA methylation loss occurs frequently in cancer genomes, primarily within lamina-
associated, late-replicating regions termed partially methylated domains (PMDs). We …

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

AE Teschendorff, CE Breeze, SC Zheng, S Beck - BMC bioinformatics, 2017 - Springer
Background Intra-sample cellular heterogeneity presents numerous challenges to the
identification of biomarkers in large Epigenome-Wide Association Studies (EWAS). While a …

Map** DNA methylation across development, genotype and schizophrenia in the human frontal cortex

AE Jaffe, Y Gao, A Deep-Soboslay, R Tao… - Nature …, 2016 - nature.com
DNA methylation (DNAm) is important in brain development and is potentially important in
schizophrenia. We characterized DNAm in prefrontal cortex from 335 non-psychiatric …