A hands-on tutorial on network and topological neuroscience

EGZ Centeno, G Moreni, C Vriend, L Douw… - Brain Structure and …, 2022 - Springer
The brain is an extraordinarily complex system that facilitates the optimal integration of
information from different regions to execute its functions. With the recent advances in …

Topological phase transitions in functional brain networks

FAN Santos, EP Raposo, MD Coutinho-Filho, M Copelli… - Physical Review E, 2019 - APS
Functional brain networks are often constructed by quantifying correlations between time
series of activity of brain regions. Their topological structure includes nodes, edges …

[HTML][HTML] Topological characteristics of grain boundary networks during severe plastic deformations of copper alloys

S Zhu, E Borodin, AP Jivkov - Acta Materialia, 2023 - Elsevier
The grain boundary character distribution strongly affects the properties of polycrystalline
materials. Grain boundaries of similar characters form networks, whose topological …

Using topological data analysis (TDA) and persistent homology to analyze the stock markets in Singapore and Taiwan

PTW Yen, SA Cheong - Frontiers in Physics, 2021 - frontiersin.org
In recent years, persistent homology (PH) and topological data analysis (TDA) have gained
increasing attention in the fields of shape recognition, image analysis, data analysis …

[HTML][HTML] From Geometry of Hamiltonian Dynamics to Topology of Phase Transitions: A Review

G Pettini, M Gori, M Pettini - Entropy, 2024 - mdpi.com
In this review work, we outline a conceptual path that, starting from the numerical
investigation of the transition between weak chaos and strong chaos in Hamiltonian systems …

Topological data analysis of continuum percolation with disks

L Speidel, HA Harrington, SJ Chapman, MA Porter - Physical Review E, 2018 - APS
We study continuum percolation with disks, a variant of continuum percolation in two-
dimensional Euclidean space, by applying tools from topological data analysis. We interpret …

Why we should use topological data analysis in ageing: towards defining the “topological shape of ageing”

T Fülöp, M Desroches, AA Cohen, FAN Santos… - Mechanisms of Ageing …, 2020 - Elsevier
Living systems are subject to the arrow of time; from birth, they undergo complex
transformations (self-organization) in a constant battle for survival, but inevitably ageing and …

Understanding changes in the topology and geometry of financial market correlations during a market crash

PTW Yen, K **a, SA Cheong - Entropy, 2021 - mdpi.com
In econophysics, the achievements of information filtering methods over the past 20 years,
such as the minimal spanning tree (MST) by Mantegna and the planar maximally filtered …

On the origin of phase transitions in the absence of symmetry-breaking

G Pettini, M Gori, R Franzosi, C Clementi… - Physica A: Statistical …, 2019 - Elsevier
In this paper we investigate the Hamiltonian dynamics of a lattice gauge model in three
spatial dimensions. Our model Hamiltonian is defined on the basis of a continuum version of …

Topological theory of phase transitions

M Gori, R Franzosi, G Pettini… - Journal of Physics A …, 2022 - iopscience.iop.org
The investigation of the Hamiltonian dynamical counterpart of phase transitions, combined
with the Riemannian geometrization of Hamiltonian dynamics, has led to a preliminary …