Evolution of bird genomes—a transposon's‐eye view

A Kapusta, A Suh - Annals of the New York Academy of …, 2017 - Wiley Online Library
Birds, the most species‐rich monophyletic group of land vertebrates, have been subject to
some of the most intense sequencing efforts to date, making them an ideal case study for …

Moderating the neutralist–selectionist debate: exactly which propositions are we debating, and which arguments are valid?

MJ de Jong, C van Oosterhout, AR Hoelzel… - Biological …, 2024 - Wiley Online Library
Half a century after its foundation, the neutral theory of molecular evolution continues to
attract controversy. The debate has been hampered by the coexistence of different …

Whole-genome analyses resolve early branches in the tree of life of modern birds

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li… - Science, 2014 - science.org
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …

Dynamics of genome size evolution in birds and mammals

A Kapusta, A Suh, C Feschotte - Proceedings of the National Academy of …, 2017 - pnas.org
Genome size in mammals and birds shows remarkably little interspecific variation compared
with other taxa. However, genome sequencing has revealed that many mammal and bird …

[HTML][HTML] Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences

K Nadachowska-Brzyska, C Li, L Smeds, G Zhang… - Current Biology, 2015 - cell.com
Global climate fluctuations have significantly influenced the distribution and abundance of
biodiversity [1]. During unfavorable glacial periods, many species experienced range …

Direct estimate of the rate of germline mutation in a bird

L Smeds, A Qvarnström, H Ellegren - Genome research, 2016 - genome.cshlp.org
The fidelity of DNA replication together with repair mechanisms ensure that the genetic
material is properly copied from one generation to another. However, on extremely rare …

Island songbirds as windows into evolution in small populations

T Leroy, M Rousselle, MK Tilak, AE Caizergues… - Current Biology, 2021 - cell.com
Due to their limited ranges and inherent isolation, island species have long been recognized
as crucial systems for tackling a range of evolutionary questions, including in the early study …

Genomic signature of an avian Lilliput effect across the K-Pg extinction

JS Berv, DJ Field - Systematic Biology, 2018 - academic.oup.com
Survivorship following major mass extinctions may be associated with a decrease in body
size—a phenomenon called the Lilliput Effect. Body size is a strong predictor of many life …

Avian genomes revisited: hidden genes uncovered and the rates versus traits paradox in birds

F Botero-Castro, E Figuet, MK Tilak… - Molecular biology …, 2017 - academic.oup.com
According to current assemblies, avian genomes differ from those of the other lineages of
amniotes in 1) containing a lower number of genes; 2) displaying a high stability of …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …