BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra

A Micsonai, F Wien, É Bulyáki, J Kun… - Nucleic acids …, 2018 - academic.oup.com
Circular dichroism (CD) spectroscopy is a widely used method to study the protein
secondary structure. However, for decades, the general opinion was that the correct …

The effect of amidation on the behaviour of antimicrobial peptides

M Mura, J Wang, Y Zhou, M Pinna… - European Biophysics …, 2016 - Springer
Abstract Aurein 2.6-COOH and aurein 3.1-COOH were studied along with their naturally
occurring C-terminally amidated analogues. Circular dichroism (CD) and molecular dynamic …

The role of circular dichroism spectroscopy in the era of integrative structural biology

BA Wallace - Current opinion in structural biology, 2019 - Elsevier
Highlights•Instrumentation developments are enabling an enhanced range of
measurements.•The PCDDB provides spectra and metadata for traceability and methods …

CAPITO—a web server-based analysis and plotting tool for circular dichroism data

C Wiedemann, P Bellstedt, M Görlach - Bioinformatics, 2013 - academic.oup.com
Motivation: Circular dichroism (CD) spectroscopy is one of the most versatile tools to study
protein folding and to validate the proper fold of purified proteins. Here, we aim to provide a …

CDtoolX, a downloadable software package for processing and analyses of circular dichroism spectroscopic data

AJ Miles, BA Wallace - Protein Science, 2018 - Wiley Online Library
Circular dichroism (CD) spectroscopy is a highly used method for the examination and
characterization of proteins, including, amongst other features, their secondary and tertiary …

A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy

A Abdul-Gader, AJ Miles, BA Wallace - Bioinformatics, 2011 - academic.oup.com
Motivation: Empirical analyses of protein secondary structures based on circular dichroism
(CD) and synchrotron radiation circular dichroism (SRCD) spectroscopic data rely on the …

Toward rational design of selective molecularly imprinted polymers (MIPs) for proteins: computational and experimental studies of acrylamide based polymers for …

MV Sullivan, SR Dennison, G Archontis… - The Journal of …, 2019 - ACS Publications
Molecularly imprinted polymers (MIPs) have potential as alternatives to antibodies in the
diagnosis and treatment of disease. However, atomistic level knowledge of the …

The PCDDB (protein circular dichroism data bank): A bioinformatics resource for protein characterisations and methods development

SG Ramalli, AJ Miles, RW Janes, BA Wallace - Journal of Molecular Biology, 2022 - Elsevier
Abstract The Protein Circular Dichroism Data Bank (PCDDB)[https://pcddb. cryst. bbk. ac. uk]
is an established resource for the biological, biophysical, chemical, bioinformatics, and …

Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas: a bioinformatic and peptidomic survey

MJ Stewart, P Favrel, BA Rotgans, T Wang, M Zhao… - BMC genomics, 2014 - Springer
Background Oysters impart significant socio-ecological benefits from primary production of
food supply, to estuarine ecosystems via reduction of water column nutrients, plankton and …

Pulmonary dry powder vaccine of pneumococcal antigen loaded nanoparticles

NK Kunda, IM Alfagih, EN Miyaji, DB Figueiredo… - International journal of …, 2015 - Elsevier
Pneumonia, caused by Streptococcus pneumoniae, mainly affects the
immunocompromised, the very young and the old, and remains one of the leading causes of …