Genetic basis for congenital heart disease: revisited: a scientific statement from the American Heart Association

ME Pierpont, M Brueckner, WK Chung, V Garg… - Circulation, 2018 - ahajournals.org
This review provides an updated summary of the state of our knowledge of the genetic
contributions to the pathogenesis of congenital heart disease. Since 2007, when the initial …

A review of deep learning applications in human genomics using next-generation sequencing data

WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …

Curated variation benchmarks for challenging medically relevant autosomal genes

J Wagner, ND Olson, L Harris, J McDaniel… - Nature …, 2022 - nature.com
The repetitive nature and complexity of some medically relevant genes poses a challenge
for their accurate analysis in a clinical setting. The Genome in a Bottle Consortium has …

A universal SNP and small-indel variant caller using deep neural networks

R Poplin, PC Chang, D Alexander, S Schwartz… - Nature …, 2018 - nature.com
Despite rapid advances in sequencing technologies, accurately calling genetic variants
present in an individual genome from billions of short, errorful sequence reads remains …

Towards precision medicine

EA Ashley - Nature Reviews Genetics, 2016 - nature.com
There is great potential for genome sequencing to enhance patient care through improved
diagnostic sensitivity and more precise therapeutic targeting. To maximize this potential …

The role of exome sequencing in newborn screening for inborn errors of metabolism

AN Adhikari, RC Gallagher, Y Wang, RJ Currier… - Nature medicine, 2020 - nature.com
Public health newborn screening (NBS) programs provide population-scale ascertainment
of rare, treatable conditions that require urgent intervention. Tandem mass spectrometry …

Deep sequencing of 10,000 human genomes

A Telenti, LCT Pierce, WH Biggs, J Di Iulio… - Proceedings of the …, 2016 - pnas.org
We report on the sequencing of 10,545 human genomes at 30×–40× coverage with an
emphasis on quality metrics and novel variant and sequence discovery. We find that 84% of …

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

MA Eberle, E Fritzilas, P Krusche, M Källberg… - Genome …, 2017 - genome.cshlp.org
Improvement of variant calling in next-generation sequence data requires a comprehensive,
genome-wide catalog of high-confidence variants called in a set of genomes for use as a …

Long-read genome sequencing identifies causal structural variation in a Mendelian disease

JD Merker, AM Wenger, T Sneddon, M Grove… - Genetics in …, 2018 - nature.com
Purpose Current clinical genomics assays primarily utilize short-read sequencing (SRS), but
SRS has limited ability to evaluate repetitive regions and structural variants. Long-read …

Precision medicine in cardiology

EM Antman, J Loscalzo - Nature Reviews Cardiology, 2016 - nature.com
The cardiovascular research and clinical communities are ideally positioned to address the
epidemic of noncommunicable causes of death, as well as advance our understanding of …