Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

Paleoproteomics

C Warinner, K Korzow Richter, MJ Collins - Chemical reviews, 2022 - ACS Publications
Paleoproteomics, the study of ancient proteins, is a rapidly growing field at the intersection of
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …

Ultra-high-throughput clinical proteomics reveals classifiers of COVID-19 infection

CB Messner, V Demichev, D Wendisch, L Michalick… - Cell systems, 2020 - cell.com
The COVID-19 pandemic is an unprecedented global challenge, and point-of-care
diagnostic classifiers are urgently required. Here, we present a platform for ultra-high …

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS

Y Bian, R Zheng, FP Bayer, C Wong, YC Chang… - Nature …, 2020 - nature.com
Nano-flow liquid chromatography tandem mass spectrometry (nano-flow LC–MS/MS) is the
mainstay in proteome research because of its excellent sensitivity but often comes at the …

An optimized shotgun strategy for the rapid generation of comprehensive human proteomes

DB Bekker-Jensen, CD Kelstrup, TS Batth, SC Larsen… - Cell systems, 2017 - cell.com
This study investigates the challenge of comprehensively cataloging the complete human
proteome from a single-cell type using mass spectrometry (MS)-based shotgun proteomics …

Trapped ion mobility spectrometry and parallel accumulation–serial fragmentation in proteomics

F Meier, MA Park, M Mann - Molecular & Cellular Proteomics, 2021 - ASBMB
Recent advances in efficiency and ease of implementation have rekindled interest in ion
mobility spectrometry, a technique that separates gas phase ions by their size and shape …

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

R Bouwmeester, R Gabriels, N Hulstaert, L Martens… - Nature …, 2021 - nature.com
The inclusion of peptide retention time prediction promises to remove peptide identification
ambiguity in complex liquid chromatography–mass spectrometry identification workflows …

Comprehensive single-shot proteomics with FAIMS on a hybrid orbitrap mass spectrometer

AS Hebert, S Prasad, MW Belford, DJ Bailey… - Analytical …, 2018 - ACS Publications
Liquid chromatography (LC) prefractionation is often implemented to increase proteomic
coverage; however, while effective, this approach is laborious, requires considerable …

Single-cell protein analysis by mass spectrometry

N Slavov - Current Opinion in Chemical Biology, 2021 - Elsevier
Human physiology and pathology arise from the coordinated interactions of diverse single
cells. However, analyzing single cells has been limited by the low sensitivity and throughput …

Label‐free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing

M Matzinger, RL Mayer, K Mechtler - Proteomics, 2023 - Wiley Online Library
The ability to map a proteomic fingerprint to transcriptomic data would master the
understanding of how gene expression translates into actual phenotype. In contrast to …