Molecular machines that facilitate bacterial outer membrane protein biogenesis

MT Doyle, HD Bernstein - Annual Review of Biochemistry, 2024 - annualreviews.org
Almost all outer membrane proteins (OMPs) in Gram-negative bacteria contain a β-barrel
domain that spans the outer membrane (OM). To reach the OM, OMPs must be translocated …

Periplasmic chaperones: outer membrane biogenesis and envelope stress

AN Combs, TJ Silhavy - Annual Review of Microbiology, 2024 - annualreviews.org
Envelope biogenesis and homeostasis in gram-negative bacteria are exceptionally intricate
processes that require a multitude of periplasmic chaperones to ensure cellular survival …

The ALFA-tag is a highly versatile tool for nanobody-based bioscience applications

H Götzke, M Kilisch, M Martínez-Carranza… - Nature …, 2019 - nature.com
Specialized epitope tags are widely used for detecting, manipulating or purifying proteins,
but often their versatility is limited. Here, we introduce the ALFA-tag, a rationally designed …

The quantitative and condition-dependent Escherichia coli proteome

A Schmidt, K Kochanowski, S Vedelaar, E Ahrné… - Nature …, 2016 - nature.com
Measuring precise concentrations of proteins can provide insights into biological processes.
Here we use efficient protein extraction and sample fractionation, as well as state-of-the-art …

Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome

S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov… - Molecular cell, 2019 - cell.com
The use of alternative translation initiation sites enables production of more than one protein
from a single gene, thereby expanding the cellular proteome. Although several such …

Protein-protein interaction networks: probing disease mechanisms using model systems

U Kuzmanov, A Emili - Genome medicine, 2013 - Springer
Protein-protein interactions (PPIs) and multi-protein complexes perform central roles in the
cellular systems of all living organisms. In humans, disruptions of the normal patterns of PPIs …

The dynamic SecYEG translocon

J Oswald, R Njenga, A Natriashvili… - Frontiers in Molecular …, 2021 - frontiersin.org
The spatial and temporal coordination of protein transport is an essential cornerstone of the
bacterial adaptation to different environmental conditions. By adjusting the protein …

When, how and why? Regulated proteolysis by the essential FtsH protease in Escherichia coli

LM Bittner, J Arends, F Narberhaus - Biological Chemistry, 2017 - degruyter.com
Cellular proteomes are dynamic and adjusted to permanently changing conditions by ATP-
fueled proteolytic machineries. Among the five AAA+ proteases in Escherichia coli FtsH is …

The Sec System: Protein Export in Escherichia coli

JM Crane, LL Randall - EcoSal Plus, 2017 - journals.asm.org
In Escherichia coli, proteins found in the periplasm or the outer membrane are exported from
the cytoplasm by the general secretory, Sec, system before they acquire stably folded …

Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria

M Gao, DN An, J Skolnick - Elife, 2022 - elifesciences.org
To reach their final destinations, outer membrane proteins (OMPs) of gram-negative bacteria
undertake an eventful journey beginning in the cytosol. Multiple molecular machines …