Graph embedding techniques for predicting missing links in biological networks: An empirical evaluation

B Teji, S Roy, DS Dhami, D Bhandari… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
Network science tries to understand the complex relationships among entities or actors of a
system through graph formalism. For instance, biological networks represent …

SCGG: A deep structure-conditioned graph generative model

F Faez, N Hashemi Diju**, M Soleymani Baghshah… - Plos one, 2022 - journals.plos.org
Deep learning-based graph generation approaches have remarkable capacities for graph
data modeling, allowing them to solve a wide range of real-world problems. Making these …

Gene regulatory network inference through link prediction using graph neural network

S Ganeshamoorthy, L Roden… - 2022 IEEE Signal …, 2022 - ieeexplore.ieee.org
Gene Regulatory Networks (GRNs) depict the causal regulatory interactions between
transcription factors (TFs) and their target genes [2], where TFs are proteins that regulate …

Missing link identification from node embeddings using graph auto encoders and its variants

B Teji, S Roy - 2022 OITS International Conference on …, 2022 - ieeexplore.ieee.org
Graph representation learning recently has proven their excellent competency in
understanding large graphs and their inner engineering for various downstream tasks. Link …

Application of Generative Graph Models in Biological Network Regeneration: A Selective Review and Qualitative Analysis

B Teji, S Roy, PH Guzzi… - 2024 IEEE International …, 2024 - ieeexplore.ieee.org
Biological networks are essential for understanding the complex cellular mechanisms of
living organisms. Simulating biological networks allows researchers to model and …

Active Learning Framework for Incomplete Networks

T Khong, C Tran, C Pham - The 40th Conference on Uncertainty in …, 2024 - openreview.net
Significant progression has been made in active learning algorithms for graph networks in
various tasks. However real-world applications frequently involve incomplete graphs with …

OpenGNN: Augmenting Graph Neural Networks for Open-Set Node Prediction in Complex Networks

B Teji, S Roy - … Conference on Advanced Network Technologies and …, 2023 - Springer
Traditional classification approaches, grounded in closed-set frameworks, face limitations in
their ability to handle novel, unseen instances that frequently arise in dynamic real-world …

[PDF][PDF] NetRA: An IntegratedWeb Platform for Large-Scale Gene Regulatory Network Reconstruction and Analysis

S Dutta, B Teji, S Dutta, S Roy - 2023 - preprints.org
Several effective online and offline inference tools offer an interactive platform for inference,
visualization, and analysis of gene regulatory networks. However, a tool currently needs to …