An extensive review of tools for manual annotation of documents

M Neves, J Ševa - Briefings in bioinformatics, 2021‏ - academic.oup.com
Motivation Annotation tools are applied to build training and test corpora, which are
essential for the development and evaluation of new natural language processing …

Extracting information from textual documents in the electronic health record: a review of recent research

SM Meystre, GK Savova… - Yearbook of medical …, 2008‏ - thieme-connect.com
Objectives We examine recent published research on the extraction of information from
textual documents in the Electronic Health Record (EHR). Methods Literature review of the …

[HTML][HTML] Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports

H Gurulingappa, AM Rajput, A Roberts, J Fluck… - Journal of biomedical …, 2012‏ - Elsevier
A significant amount of information about drug-related safety issues such as adverse effects
are published in medical case reports that can only be explored by human readers due to …

RelEx—Relation extraction using dependency parse trees

K Fundel, R Küffner, R Zimmer - Bioinformatics, 2007‏ - academic.oup.com
Motivation: The discovery of regulatory pathways, signal cascades, metabolic processes or
disease models requires knowledge on individual relations like eg physical or regulatory …

Corpus annotation for mining biomedical events from literature

JD Kim, T Ohta, J Tsujii - BMC bioinformatics, 2008‏ - Springer
Abstract Background Advanced Text Mining (TM) such as semantic enrichment of papers,
event or relation extraction, and intelligent Question Answering have increasingly attracted …

Frontiers of biomedical text mining: current progress

P Zweigenbaum, D Demner-Fushman… - Briefings in …, 2007‏ - academic.oup.com
It is now almost 15 years since the publication of the first paper on text mining in the
genomics domain, and decades since the first paper on text mining in the medical domain …

[PDF][PDF] Sentiment analysis of citations using sentence structure-based features

A Athar - Proceedings of the ACL 2011 student session, 2011‏ - aclanthology.org
Sentiment analysis of citations in scientific papers and articles is a new and interesting
problem due to the many linguistic differences between scientific texts and other genres. In …

Automatic recognition of conceptualization zones in scientific articles and two life science applications

M Liakata, S Saha, S Dobnik, C Batchelor… - …, 2012‏ - academic.oup.com
Motivation: Scholarly biomedical publications report on the findings of a research
investigation. Scientists use a well-established discourse structure to relate their work to the …

[ספר][B] Healthcare data analytics

CK Reddy, CC Aggarwal - 2015‏ - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …

Comparative analysis of five protein-protein interaction corpora

S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter… - BMC …, 2008‏ - Springer
Background Growing interest in the application of natural language processing methods to
biomedical text has led to an increasing number of corpora and methods targeting protein …