The NF1 somatic mutational landscape in sporadic human cancers

C Philpott, H Tovell, IM Frayling, DN Cooper… - Human genomics, 2017 - Springer
Abstract Background Neurofibromatosis type 1 (NF1: Online Mendelian Inheritance in Man
(OMIM)# 162200) is an autosomal dominantly inherited tumour predisposition syndrome …

CD117/c-kit in cancer stem cell-mediated progression and therapeutic resistance

BM Foster, D Zaidi, TR Young, ME Mobley, BA Kerr - Biomedicines, 2018 - mdpi.com
Metastasis is the primary cause of cancer patient morbidity and mortality, but due to
persisting gaps in our knowledge, it remains untreatable. Metastases often occur as patient …

Genomic and transcriptomic hallmarks of poorly differentiated and anaplastic thyroid cancers

I Landa, T Ibrahimpasic, L Boucai… - The Journal of …, 2016 - Am Soc Clin Investig
BACKGROUND. Poorly differentiated thyroid cancer (PDTC) and anaplastic thyroid cancer
(ATC) are rare and frequently lethal tumors that so far have not been subjected to …

Genomics of lethal prostate cancer at diagnosis and castration resistance

J Mateo, G Seed, C Bertan, P Rescigno… - The Journal of …, 2020 - Am Soc Clin Investig
The genomics of primary prostate cancer differ from those of metastatic castration-resistant
prostate cancer (mCRPC). We studied genomic aberrations in primary prostate cancer …

[HTML][HTML] Institutional implementation of clinical tumor profiling on an unselected cancer population

LM Sholl, K Do, P Shivdasani, E Cerami, AM Dubuc… - JCI insight, 2016 - ncbi.nlm.nih.gov
BACKGROUND. Comprehensive genomic profiling of a patient's cancer can be used to
diagnose, monitor, and recommend treatment. Clinical implementation of tumor profiling in …

[HTML][HTML] Mitochondrial dysregulation and glycolytic insufficiency functionally impair CD8 T cells infiltrating human renal cell carcinoma

PJ Siska, KE Beckermann, FM Mason, G Andrejeva… - JCI insight, 2017 - ncbi.nlm.nih.gov
Cancer cells can inhibit effector T cells (Teff) through both immunomodulatory receptors and
the impact of cancer metabolism on the tumor microenvironment. Indeed, Teff require high …

MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data

A Koch, T De Meyer, J Jeschke, W Van Criekinge - BMC genomics, 2015 - Springer
Background In recent years, increasing amounts of genomic and clinical cancer data have
become publically available through large-scale collaborative projects such as The Cancer …

Germinal center reactions in tertiary lymphoid structures associate with neoantigen burden, humoral immunity and long-term survivorship in pancreatic cancer

AJ Gunderson, V Rajamanickam, C Bui… - …, 2021 - Taylor & Francis
Pancreatic ductal adenocarcinoma (PDAC) has traditionally been thought of as an
immunologically quiescent tumor type presumably because of a relatively low tumor …

Distinct transcriptional programs stratify ovarian cancer cell lines into the five major histological subtypes

BM Barnes, L Nelson, A Tighe, GJ Burghel, IH Lin… - Genome Medicine, 2021 - Springer
Background Epithelial ovarian cancer (OC) is a heterogenous disease consisting of five
major histologically distinct subtypes: high-grade serous (HGSOC), low-grade serous …

Genetic hallmarks of recurrent/metastatic adenoid cystic carcinoma

AS Ho, A Ochoa, G Jayakumaran… - The Journal of …, 2019 - Am Soc Clin Investig
BACKGROUND Adenoid cystic carcinoma (ACC) is a rare malignancy arising in salivary
glands and other sites, characterized by high rates of relapse and distant spread …