In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories
Shifting from chemical to biotechnological processes is one of the cornerstones of 21st
century industry. The production of a great range of chemicals via biotechnological means is …
century industry. The production of a great range of chemicals via biotechnological means is …
Algal cell factories: approaches, applications, and potentials
With the advent of modern biotechnology, microorganisms from diverse lineages have been
used to produce bio-based feedstocks and bioactive compounds. Many of these compounds …
used to produce bio-based feedstocks and bioactive compounds. Many of these compounds …
Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum
Diatoms are prominent marine microalgae, interesting not only from an ecological point of
view, but also for their possible use in biotechnology applications. They can be cultivated in …
view, but also for their possible use in biotechnology applications. They can be cultivated in …
Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms
A von Kamp, S Klamt - Nature communications, 2017 - nature.com
Computational modelling of metabolic networks has become an established procedure in
the metabolic engineering of production strains. One key principle that is frequently used to …
the metabolic engineering of production strains. One key principle that is frequently used to …
Genome-scale model reveals metabolic basis of biomass partitioning in a model diatom
Diatoms are eukaryotic microalgae that contain genes from various sources, including
bacteria and the secondary endosymbiotic host. Due to this unique combination of genes …
bacteria and the secondary endosymbiotic host. Due to this unique combination of genes …
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints
Elementary flux modes (EFMs) emerged as a formal concept to describe metabolic
pathways and have become an established tool for constraint-based modeling and …
pathways and have become an established tool for constraint-based modeling and …
On the feasibility of growth-coupled product synthesis in microbial strains
Enforcing obligate coupling of growth with synthesis of a desired product has become a key
principle for metabolic engineering of microbial production strains. Various methods from …
principle for metabolic engineering of microbial production strains. Various methods from …
Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production
Abstract Background Nannochloropsis salina (= Eustigmatophyceae) is a marine microalga
which has become a biotechnological target because of its high capacity to produce …
which has become a biotechnological target because of its high capacity to produce …
Metabolomics integrated elementary flux mode analysis in large metabolic networks
Elementary flux modes (EFMs) are non-decomposable steady-state pathways in metabolic
networks. They characterize phenotypes, quantify robustness or identify engineering targets …
networks. They characterize phenotypes, quantify robustness or identify engineering targets …
Metabolic modelling links Warburg effect to collagen formation, angiogenesis and inflammation in the tumoral stroma
Cancer cells are known to express the Warburg effect—increased glycolysis and formation
of lactic acid even in the presence of oxygen—as well as high glutamine uptake. In tumors …
of lactic acid even in the presence of oxygen—as well as high glutamine uptake. In tumors …