Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
Accurate and fast graph-based pangenome annotation and clustering with ggCaller
Bacterial genomes differ in both gene content and sequence mutations, which underlie
extensive phenotypic diversity, including variation in susceptibility to antimicrobials or …
extensive phenotypic diversity, including variation in susceptibility to antimicrobials or …
PanKmer: k-mer-based and reference-free pangenome analysis
AJ Aylward, S Petrus, A Mamerto, NT Hartwick… - …, 2023 - academic.oup.com
Pangenomes are replacing single reference genomes as the definitive representation of
DNA sequence within a species or clade. Pangenome analysis predominantly leverages …
DNA sequence within a species or clade. Pangenome analysis predominantly leverages …
Seven quick tips for gene-focused computational pangenomic analysis
Pangenomics is a relatively new scientific field which investigates the union of all the
genomes of a clade. The word pan means everything in ancient Greek; the term …
genomes of a clade. The word pan means everything in ancient Greek; the term …
Comparative Genome Annotation
S Nachtweide, L Romoth, M Stanke - Comparative Genomics: Methods …, 2024 - Springer
Newly sequenced genomes are being added to the tree of life at an unprecedented fast
pace. A large proportion of such new genomes are phylogenetically close to previously …
pace. A large proportion of such new genomes are phylogenetically close to previously …
Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence
Fungal pathogens exhibit extensive strain heterogeneity, including variation in virulence.
Whether closely related non-pathogenic species also exhibit strain heterogeneity remains …
Whether closely related non-pathogenic species also exhibit strain heterogeneity remains …
Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration
Fusarium head blight (FHB) is one of the most destructive wheat diseases worldwide. To
understand the impact of human migration and changes in agricultural practices on crop …
understand the impact of human migration and changes in agricultural practices on crop …
Lactuca super-pangenome reduces bias towards reference genes in lettuce research
Abstract Background Breeding of lettuce (Lactuca sativa L.), the most important leafy
vegetable worldwide, for enhanced disease resistance and resilience relies on multiple wild …
vegetable worldwide, for enhanced disease resistance and resilience relies on multiple wild …
Cross-species transcriptomics reveals differential regulation of essential photosynthesis genes in Hirschfeldia incana
F Garassino, S Bengoa Luoni… - G3: Genes …, 2024 - academic.oup.com
Photosynthesis is the only yield-related trait not yet substantially improved by plant breeding.
Previously, we have established H. incana as the model plant for high photosynthetic light …
Previously, we have established H. incana as the model plant for high photosynthetic light …
[PDF][PDF] Inferring long-term and short-term determinants of genetic diversity in honey bees: Beekee** impact and conservation strategies
Bees are vital pollinators in natural and agricultural landscapes around the globe, playing a
key role in maintaining flowering plant biodiversity and ensuring food security. Among the …
key role in maintaining flowering plant biodiversity and ensuring food security. Among the …