Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

AS Rifaioglu, H Atas, MJ Martin… - Briefings in …, 2019 - academic.oup.com
The identification of interactions between drugs/compounds and their targets is crucial for
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …

Graph convolutional networks for computational drug development and discovery

M Sun, S Zhao, C Gilvary, O Elemento… - Briefings in …, 2020 - academic.oup.com
Despite the fact that deep learning has achieved remarkable success in various domains
over the past decade, its application in molecular informatics and drug discovery is still …

Deep learning for drug design: an artificial intelligence paradigm for drug discovery in the big data era

Y **g, Y Bian, Z Hu, L Wang, XQS **e - The AAPS journal, 2018 - Springer
Over the last decade, deep learning (DL) methods have been extremely successful and
widely used to develop artificial intelligence (AI) in almost every domain, especially after it …

Applications of deep learning in biomedicine

P Mamoshina, A Vieira, E Putin… - Molecular …, 2016 - ACS Publications
Increases in throughput and installed base of biomedical research equipment led to a
massive accumulation of-omics data known to be highly variable, high-dimensional, and …

Deep learning applications for predicting pharmacological properties of drugs and drug repurposing using transcriptomic data

A Aliper, S Plis, A Artemov, A Ulloa… - Molecular …, 2016 - ACS Publications
Deep learning is rapidly advancing many areas of science and technology with multiple
success stories in image, text, voice and video recognition, robotics, and autonomous …

Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey

A Ezzat, M Wu, XL Li, CK Kwoh - Briefings in bioinformatics, 2019 - academic.oup.com
Computational prediction of drug–target interactions (DTIs) has become an essential task in
the drug discovery process. It narrows down the search space for interactions by suggesting …

The next era: deep learning in pharmaceutical research

S Ekins - Pharmaceutical research, 2016 - Springer
Over the past decade we have witnessed the increasing sophistication of machine learning
algorithms applied in daily use from internet searches, voice recognition, social network …

Machine learning and data mining frameworks for predicting drug response in cancer: An overview and a novel in silico screening process based on association rule …

K Vougas, T Sakellaropoulos, A Kotsinas… - Pharmacology & …, 2019 - Elsevier
A major challenge in cancer treatment is predicting the clinical response to anti-cancer
drugs on a personalized basis. The success of such a task largely depends on the ability to …

Design of efficient computational workflows for in silico drug repurposing

Q Vanhaelen, P Mamoshina, AM Aliper, A Artemov… - Drug Discovery …, 2017 - Elsevier
Highlights•Conceptual foundations of the drug repurposing paradigm are
reviewed.•Description of the technological trends behind the raise of in silico …