Regulation of heat-shock genes in bacteria: from signal sensing to gene expression output

D Roncarati, V Scarlato - FEMS microbiology reviews, 2017 - academic.oup.com
The heat-shock response is a mechanism of cellular protection against sudden adverse
environmental growth conditions and results in the prompt production of various heat-shock …

Multiple transcriptional factors regulate transcription of the rpoE gene in Escherichia coli under different growth conditions and when the lipopolysaccharide …

G Klein, A Stupak, D Biernacka, P Wojtkiewicz… - Journal of Biological …, 2016 - jbc.org
The RpoE σ factor is essential for the viability of Escherichia coli. RpoE regulates
extracytoplasmic functions including lipopolysaccharide (LPS) translocation and some of its …

Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis

C Peano, J Wolf, J Demol, E Rossi, L Petiti… - Scientific reports, 2015 - nature.com
In bacteria, selective promoter recognition by RNA polymerase is achieved by its association
with σ factors, accessory subunits able to direct RNA polymerase “core enzyme”(E) to …

Novel RpoS-dependent mechanisms strengthen the envelope permeability barrier during stationary phase

AM Mitchell, W Wang, TJ Silhavy - Journal of bacteriology, 2017 - journals.asm.org
Gram-negative bacteria have effective methods of excluding toxic compounds, including a
largely impermeable outer membrane (OM) and a range of efflux pumps. Furthermore, when …

Promoters of Escherichia coli versus Promoter Islands: Function and Structure Comparison

VV Panyukov, ON Ozoline - PLoS one, 2013 - journals.plos.org
Expression of bacterial genes takes place under the control of RNA polymerase with
exchangeable σ-subunits and multiple transcription factors. A typical promoter region …

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features

JH Seo, JSJ Hong, D Kim, BK Cho, TW Huang, SF Tsai… - BMC genomics, 2012 - Springer
Background The increasing number of infections caused by strains of Klebsiella
pneumoniae that are resistant to multiple antibiotics has developed into a major medical …

The role of alternative sigma factors in pathogen virulence

M Roberts, G Rowley, J Kormanec… - … : Virulence Factors and …, 2017 - Springer
Alternative sigma factors enable bacteria to change the promoter specificity of the core RNA
polymerase to enable the expression of genes that give them advantages in particular …

Selection of Escherichia coli heat shock promoters toward their application as stress probes

JL Rodrigues, M Sousa, KLJ Prather, LD Kluskens… - Journal of …, 2014 - Elsevier
The mechanism of heat shock response of Escherichia coli can be explored to program
novel biological functions. In this study, the strongest heat shock promoters were identified …

Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o-Xylene by RNA-Seq

J Zampolli, A Di Canito, A Manconi, L Milanesi… - Frontiers in …, 2020 - frontiersin.org
Xylenes are considered one of the most common hazardous sources of environmental
contamination. The biodegradation of these compounds has been often reported, rarer the …

Insights into the Extracytoplasmic Stress Response of Xanthomonas campestris pv. campestris: Role and Regulation of σE-Dependent Activity

P Bordes, L Lavatine, K Phok, R Barriot… - Journal of …, 2011 - journals.asm.org
Xanthomonas campestris pv. campestris is an epiphytic bacterium that can become a
vascular pathogen responsible for black rot disease of crucifers. To adapt gene expression …