Improving biomedical information retrieval with neural retrievers

M Luo, A Mitra, T Gokhale, C Baral - … of the AAAI Conference on Artificial …, 2022 - ojs.aaai.org
Abstract Information retrieval (IR) is essential in search engines and dialogue systems as
well as natural language processing tasks such as open-domain question answering. IR …

Overview of bioasq 2021: The ninth bioasq challenge on large-scale biomedical semantic indexing and question answering

A Nentidis, G Katsimpras, E Vandorou… - Experimental IR Meets …, 2021 - Springer
Advancing the state-of-the-art in large-scale biomedical semantic indexing and question
answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks …

Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking

D Gupta, D Demner-Fushman - International Conference on Artificial …, 2024 - Springer
Pre-trained language models (PLMs) have proven to be effective for document re-ranking
task. However, they lack the ability to fully interpret the semantics of biomedical and …

[PDF][PDF] Universal Passage Weighting Mecanism (UPWM) in BioASQ 9b.

T Almeida, S Matos - CLEF (Working Notes), 2021 - ceur-ws.org
This paper presents the participation of the University of Aveiro Biomedical Informatics and
Techologies group (BIT) in the ninth edition of the BioASQ challenge for document and …

[PDF][PDF] BioASQ Synergy: A strong and simple baseline rooted in relevance feedback.

T Almeida, S Matos - CLEF (Working Notes), 2021 - ceur-ws.org
This paper presents the participation of the University of Aveiro Biomedical Informatics and
Techologies (BIT) group in the Synergy task of the ninth edition of the BioASQ challenge …

[PDF][PDF] BIT. UA at BioASQ 12: From Retrieval to Answer Generation

T Almeida, RAA Jonker, J Reis, JR Almeida, S Matos - 2024 - ceur-ws.org
Biomedical information retrieval and question-answering are vital for accessing and
processing the ever-increasing volume of biomedical data. Effective systems in this domain …

Mitigating Data Shift of Biomedical Research Articles for Information Retrieval and Semantic Indexing

N Ebadi, A Rios, P Najafirad - … of the Third Workshop on Scholarly …, 2022 - aclanthology.org
Researchers have explored novel methods for both semantic indexing and information
retrieval of biomedical research articles. Moreover, most solutions treat each task …

Benchmarking a transformer-FREE model for ad-hoc retrieval

T Almeida, S Matos - Proceedings of the 16th Conference of the …, 2021 - aclanthology.org
Transformer-based “behemoths” have grown in popularity, as well as structurally, shattering
multiple NLP benchmarks along the way. However, their real-world usability remains a …

[PDF][PDF] BIT. UA@ TREC 2020 Deep Learning Track

T Almeida, S Matos - researchgate.net
We describe a two-stage retrieval pipeline for the TREC Deep Learning 2020 track, where
we used a lightweight neural model to rerank a baseline produced by an efficient traditional …

[PDF][PDF] University of Glasgow Terrier Team and UFMG at the TREC 2020 Precision Medicine Track.

A Ueda, RLT Santos, C Macdonald, I Ounis - TREC, 2020 - trec.nist.gov
For TREC 2020, we explore different re-ranking strategies by integrating PyTerrier—a
framework which allows us to build advanced retrieval pipelines—with state-of-the-art BERT …