Drug repurposing for viral cancers: A paradigm of machine learning, deep learning, and virtual screening‐based approaches

F Ahmed, IS Kang, KH Kim, A Asif… - Journal of Medical …, 2023 - Wiley Online Library
Cancer management is major concern of health organizations and viral cancers account for
approximately 15.4% of all known human cancers. Due to large number of patients, efficient …

Decoding Connectivity Map-based drug repurposing for oncotherapy

Y Zhao, X Chen, J Chen, X Qi - Briefings in Bioinformatics, 2023 - academic.oup.com
The rising global burden of cancer has driven considerable efforts into the research and
development of effective anti-cancer agents. Fortunately, with impressive advances in …

Exploring pharmacological active ingredients of traditional Chinese medicine by pharmacotranscriptomic map in ITCM

S Tian, J Zhang, S Yuan, Q Wang, C Lv… - Briefings in …, 2023 - academic.oup.com
With the emergence of high-throughput technologies, computational screening based on
gene expression profiles has become one of the most effective methods for drug discovery …

Targeting the immune privilege of tumor-initiating cells to enhance cancer immunotherapy

C Yang, H Geng, X Yang, S Ji, Z Liu, H Feng, Q Li… - Cancer Cell, 2024 - cell.com
Tumor-initiating cells (TICs) possess the ability to evade anti-tumor immunity, potentially
explaining many failures of cancer immunotherapy. Here, we identify CD49f as a prominent …

[HTML][HTML] Identification of immune microenvironment subtypes and signature genes for Alzheimer's disease diagnosis and risk prediction based on explainable …

Y Lai, P Lin, F Lin, M Chen, C Lin, X Lin, L Wu… - Frontiers in …, 2022 - frontiersin.org
Background Using interpretable machine learning, we sought to define the immune
microenvironment subtypes and distinctive genes in AD. Methods ssGSEA, LASSO …

An artificial intelligence network‐guided signature for predicting outcome and immunotherapy response in lung adenocarcinoma patients based on 26 machine …

N Zhang, H Zhang, Z Liu, Z Dai, W Wu, R Zhou… - Cell …, 2023 - Wiley Online Library
The immune cells play an increasingly vital role in influencing the proliferation, progression,
and metastasis of lung adenocarcinoma (LUAD) cells. However, the potential of immune …

COIMMR: a computational framework to reveal the contribution of herbal ingredients against human cancer via immune microenvironment and metabolic …

S Tian, Y Li, J Xu, L Zhang, J Zhang, J Lu… - Briefings in …, 2023 - academic.oup.com
Immune evasion and metabolism reprogramming have been regarded as two vital hallmarks
of the mechanism of carcinogenesis. Thus, targeting the immune microenvironment and the …

Comprehensive pan-cancer analysis reveals EPHB2 is a novel predictive biomarker for prognosis and immunotherapy response

S Xu, Y Zheng, M Ye, T Shen, D Zhang, Z Li, Z Lu - BMC cancer, 2024 - Springer
Purpose Recent studies have increasingly linked Ephrin receptor B2 (EPHB2) to cancer
progression. However, comprehensive investigations into the immunological roles and …

Multi-region sequencing with spatial information enables accurate heterogeneity estimation and risk stratification in liver cancer

C Yang, S Zhang, Z Cheng, Z Liu, L Zhang, K Jiang… - Genome Medicine, 2022 - Springer
Background Numerous studies have used multi-region sampling approaches to characterize
intra-tumor heterogeneity (ITH) in hepatocellular carcinoma (HCC). However, conventional …

Interrogating colorectal cancer metastasis to liver: a search for clinically viable compounds and mechanistic insights in colorectal cancer Patient Derived Organoids

M Cioce, MR Fumagalli, S Donzelli, F Goeman… - Journal of Experimental …, 2023 - Springer
Abstract Background Approximately 20–50% of patients presenting with localized colorectal
cancer progress to stage IV metastatic disease (mCRC) following initial treatment and this is …