Attractor and integrator networks in the brain

M Khona, IR Fiete - Nature Reviews Neuroscience, 2022 - nature.com
In this Review, we describe the singular success of attractor neural network models in
describing how the brain maintains persistent activity states for working memory, corrects …

The visual systems of zebrafish

H Baier, EK Scott - Annual Review of Neuroscience, 2024 - annualreviews.org
The zebrafish visual system has become a paradigmatic preparation for behavioral and
systems neuroscience. Around 40 types of retinal ganglion cells (RGCs) serve as matched …

[HTML][HTML] Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity

NL Turner, T Macrina, JA Bae, R Yang, AM Wilson… - Cell, 2022 - cell.com
We assembled a semi-automated reconstruction of L2/3 mouse primary visual cortex from∼
250× 140× 90 μm 3 of electron microscopic images, including pyramidal and non-pyramidal …

Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain

F Svara, D Förster, F Kubo, M Januszewski… - Nature …, 2022 - nature.com
Dense reconstruction of synaptic connectivity requires high-resolution electron microscopy
images of entire brains and tools to efficiently trace neuronal wires across the volume. To …

Functional connectomics spanning multiple areas of mouse visual cortex

MICrONS Consortium, JA Bae, M Baptiste, CA Bishop… - BioRxiv, 2021 - biorxiv.org
To understand the brain we must relate neurons' functional responses to the circuit
architecture that shapes them. Here, we present a large functional connectomics dataset …

[HTML][HTML] Digital museum of retinal ganglion cells with dense anatomy and physiology

JA Bae, S Mu, JS Kim, NL Turner, I Tartavull, N Kemnitz… - Cell, 2018 - cell.com
When 3D electron microscopy and calcium imaging are used to investigate the structure and
function of neural circuits, the resulting datasets pose new challenges of visualization and …

The evolution of Big Data in neuroscience and neurology

L Dipietro, P Gonzalez-Mego, C Ramos-Estebanez… - Journal of Big Data, 2023 - Springer
Neurological diseases are on the rise worldwide, leading to increased healthcare costs and
diminished quality of life in patients. In recent years, Big Data has started to transform the …

A petascale automated imaging pipeline for map** neuronal circuits with high-throughput transmission electron microscopy

W Yin, D Brittain, J Borseth, ME Scott, D Williams… - Nature …, 2020 - nature.com
Electron microscopy (EM) is widely used for studying cellular structure and network
connectivity in the brain. We have built a parallel imaging pipeline using transmission …

Brain-wide organization of neuronal activity and convergent sensorimotor transformations in larval zebrafish

X Chen, Y Mu, Y Hu, AT Kuan, M Nikitchenko… - Neuron, 2018 - cell.com
Simultaneous recordings of large populations of neurons in behaving animals allow detailed
observation of high-dimensional, complex brain activity. However, experimental approaches …

The zebrafish visual system: from circuits to behavior

JH Bollmann - Annual review of vision science, 2019 - annualreviews.org
Visual stimuli can evoke complex behavioral responses, but the underlying streams of
neural activity in mammalian brains are difficult to follow because of their size. Here, I review …