Diversification of Neotropical freshwater fishes

JS Albert, VA Tagliacollo… - Annual Review of Ecology …, 2020 - annualreviews.org
Neotropical freshwater fishes (NFFs) constitute the most diverse continental vertebrate fauna
on Earth, with more than 6,200 named species compressed into an aquatic footprint< 0.5 …

Understanding explosive diversification through cichlid fish genomics

W Salzburger - Nature Reviews Genetics, 2018 - nature.com
Owing to their taxonomic, phenotypic, ecological and behavioural diversity and propensity
for explosive diversification, the assemblages of cichlid fish in the East African Great Lakes …

Phylogenetic classification of bony fishes

R Betancur-R, EO Wiley, G Arratia, A Acero… - BMC evolutionary …, 2017 - Springer
Background Fish classifications, as those of most other taxonomic groups, are being
transformed drastically as new molecular phylogenies provide support for natural groups …

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

LC Hughes, G Ortí, Y Huang, Y Sun… - Proceedings of the …, 2018 - pnas.org
Our understanding of phylogenetic relationships among bony fishes has been transformed
by analysis of a small number of genes, but uncertainty remains around critical nodes …

Selecting optimal partitioning schemes for phylogenomic datasets

R Lanfear, B Calcott, D Kainer, C Mayer… - BMC evolutionary …, 2014 - Springer
Background Partitioning involves estimating independent models of molecular evolution for
different subsets of sites in a sequence alignment, and has been shown to improve …

Resolution of ray-finned fish phylogeny and timing of diversification

TJ Near, RI Eytan, A Dornburg, KL Kuhn… - Proceedings of the …, 2012 - pnas.org
Ray-finned fishes make up half of all living vertebrate species. Nearly all ray-finned fishes
are teleosts, which include most commercially important fish species, several model …

[HTML][HTML] The tree of life and a new classification of bony fishes

R Betancur-R, RE Broughton, EO Wiley… - PLoS …, 2013 - pmc.ncbi.nlm.nih.gov
The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny
that includes all major groups. The situation is most critical for a large clade of spiny-finned …

Vision using multiple distinct rod opsins in deep-sea fishes

Z Musilova, F Cortesi, M Matschiner, WIL Davies… - Science, 2019 - science.org
Vertebrate vision is accomplished through light-sensitive photopigments consisting of an
opsin protein bound to a chromophore. In dim light, vertebrates generally rely on a single …

Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes

TJ Near, A Dornburg, RI Eytan, BP Keck… - Proceedings of the …, 2013 - pnas.org
Spiny-rayed fishes, or acanthomorphs, comprise nearly one-third of all living vertebrates.
Despite their dominant role in aquatic ecosystems, the evolutionary history and tempo of …

Enigmatic ear stones: what we know about the functional role and evolution of fish otoliths

T Schulz‐Mirbach, F Ladich, M Plath… - Biological Reviews, 2019 - Wiley Online Library
Otoliths in bony fishes play an important role in the senses of balance and hearing. Otolith
mass and shape are, among others, likely to be decisive factors influencing otolith motion …