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Molecular dynamics simulations in drug discovery and pharmaceutical development
Molecular dynamics (MD) simulations have become increasingly useful in the modern drug
development process. In this review, we give a broad overview of the current application …
development process. In this review, we give a broad overview of the current application …
Bioinformatics approaches to discovering food-derived bioactive peptides: Reviews and perspectives
Food-derived bioactive peptides (FBPs) are gaining interest due to their great potential in
agricultural byproduct valorization and high-activity peptide screening. The introduction of …
agricultural byproduct valorization and high-activity peptide screening. The introduction of …
SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina
Drug discovery aims to identify potential therapeutic compounds capable of modulating the
activity of specific biological targets. Molecular docking can efficiently support this process …
activity of specific biological targets. Molecular docking can efficiently support this process …
Structure of SARS-CoV-2 membrane protein essential for virus assembly
Z Zhang, N Nomura, Y Muramoto, T Ekimoto… - Nature …, 2022 - nature.com
The coronavirus membrane protein (M) is the most abundant viral structural protein and
plays a central role in virus assembly and morphogenesis. However, the process of M …
plays a central role in virus assembly and morphogenesis. However, the process of M …
Nirmatrelvir-resistant SARS-CoV-2 variants with high fitness in an infectious cell culture system
The oral protease inhibitor nirmatrelvir is of key importance for prevention of severe
coronavirus disease 2019 (COVID-19). To facilitate resistance monitoring, we studied …
coronavirus disease 2019 (COVID-19). To facilitate resistance monitoring, we studied …
SwissParam 2023: a modern web-based tool for efficient small molecule parametrization
Most steps of drug discovery are now routinely supported and accelerated by computer-
aided drug design tools. Among them, structure-based approaches use the three …
aided drug design tools. Among them, structure-based approaches use the three …
N501Y mutation of spike protein in SARS-CoV-2 strengthens its binding to receptor ACE2
SARS-CoV-2 has been spreading around the world for the past year. Recently, several
variants such as B. 1.1. 7 (alpha), B. 1.351 (beta), and P. 1 (gamma), which share a key …
variants such as B. 1.1. 7 (alpha), B. 1.351 (beta), and P. 1 (gamma), which share a key …
Tailoring coordination environments of single-atom electrocatalysts for hydrogen evolution by topological heteroatom transfer
S Qian, F Xu, Y Fan, N Cheng, H Xue, Y Yuan… - Nature …, 2024 - nature.com
The rational design of carbon-supported transition-metal single-atom catalysts requires the
precise arrangement of heteroatoms within the single-atom catalysts. However, achieving …
precise arrangement of heteroatoms within the single-atom catalysts. However, achieving …
Magnetic sensitivity of cryptochrome 4 from a migratory songbird
J Xu, LE Jarocha, T Zollitsch, M Konowalczyk… - Nature, 2021 - nature.com
Night-migratory songbirds are remarkably proficient navigators. Flying alone and often over
great distances, they use various directional cues including, crucially, a light-dependent …
great distances, they use various directional cues including, crucially, a light-dependent …
Characterization and engineering of a two-enzyme system for plastics depolymerization
Plastics pollution represents a global environmental crisis. In response, microbes are
evolving the capacity to utilize synthetic polymers as carbon and energy sources. Recently …
evolving the capacity to utilize synthetic polymers as carbon and energy sources. Recently …